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(-) Description

Title :  GLYCOPROTEIN B FROM HERPES SIMPLEX VIRUS TYPE 1, Y179S MUTANT, LOW-PH
 
Authors :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Date :  09 Jul 10  (Deposition) - 01 Dec 10  (Release) - 12 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.88
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B  (3x)
Biol. Unit 2:  A  (3x)
Biol. Unit 3:  C  (3x)
Biol. Unit 4:  D  (3x)
Keywords :  Coiled-Coil, Envelope Glycoprotein, Membrane Fusion, Viral Protein, Glycoprotein B, Herpesvirus 1, Hsv-1, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Structural Basis Of Local, Ph-Dependent Conformational Changes In Glycoprotein B From Herpes Simplex Virus Type 1.
J. Virol. V. 84 12924 2010
PubMed-ID: 20943984  |  Reference-DOI: 10.1128/JVI.01750-10

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN B
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PVT-BAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: ECTODOMAIN (UNP RESIDUES 30 TO 730)
    Gene: GB, UL27
    Mutation: YES
    Organism Common: HHV-1
    Organism Scientific: HUMAN HERPESVIRUS 1
    Organism Taxid: 10306
    Strain: KOS
    Synonym: GB, GB-1, GB1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x):  B  
Biological Unit 2 (3x): A   
Biological Unit 3 (3x):   C 
Biological Unit 4 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MRY1Ligand/IonMESO-ERYTHRITOL
3NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY-1Ligand/IonMESO-ERYTHRITOL
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY-1Ligand/IonMESO-ERYTHRITOL
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY3Ligand/IonMESO-ERYTHRITOL
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY-1Ligand/IonMESO-ERYTHRITOL
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU B:138 , ASN B:141 , NAG B:1142BINDING SITE FOR RESIDUE NAG A 1141
02AC2SOFTWAREGLU B:138 , NAG B:1141BINDING SITE FOR RESIDUE NAG A 1142
03AC3SOFTWAREASN B:398BINDING SITE FOR RESIDUE NAG A 1398
04AC4SOFTWAREALA B:426 , ASN B:430BINDING SITE FOR RESIDUE NAG A 1430
05AC5SOFTWAREGLN A:140 , ASN A:141BINDING SITE FOR RESIDUE NAG B 1141
06AC6SOFTWAREASN A:430BINDING SITE FOR RESIDUE NAG B 1430
07AC7SOFTWAREASN A:674BINDING SITE FOR RESIDUE NAG B 1674
08AC8SOFTWAREASN A:511BINDING SITE FOR RESIDUE CL B 2
09AC9SOFTWAREGLY C:139 , GLN C:140 , ASN C:141BINDING SITE FOR RESIDUE NAG C 1141
10BC1SOFTWAREALA C:426 , ASN C:430BINDING SITE FOR RESIDUE NAG C 1430
11BC2SOFTWAREARG C:523 , ASN C:674BINDING SITE FOR RESIDUE NAG C 1674
12BC3SOFTWAREARG C:304 , ASP C:323 , THR C:341 , PHE D:194 , GLU D:195 , ASP D:199BINDING SITE FOR RESIDUE MRY C 2001
13BC4SOFTWAREGLU D:138 , GLY D:139 , GLN D:140 , ASN D:141 , NAG D:1142BINDING SITE FOR RESIDUE NAG D 1141
14BC5SOFTWAREGLU D:138 , NAG D:1141BINDING SITE FOR RESIDUE NAG D 1142
15BC6SOFTWAREASN D:398 , ASN D:445BINDING SITE FOR RESIDUE NAG D 1398
16BC7SOFTWAREASN D:153BINDING SITE FOR RESIDUE CL D 1

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:116 -A:573
2A:133 -A:529
3A:207 -A:271
4A:364 -A:412
5A:596 -A:633
6B:116 -B:573
7B:133 -B:529
8B:207 -B:271
9B:364 -B:412
10B:596 -B:633
11C:116 -C:573
12C:133 -C:529
13C:207 -C:271
14C:364 -C:412
15C:596 -C:633
16D:116 -D:573
17D:133 -D:529
18D:207 -D:271
19D:364 -D:412
20D:596 -D:633

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Ala B:122 -Thr B:123
2Tyr B:282 -Pro B:283
3Met A:183 -Gly A:184
4Tyr A:282 -Pro A:283
5Tyr C:265 -Gly C:266
6Tyr C:282 -Pro C:283
7Tyr D:282 -Pro D:283

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NWD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NWD)

(-) Exons   (0, 0)

(no "Exon" information available for 3NWD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:606
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:620
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723
             GB_HHV1K   104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
               SCOP domains d3nwda_ A: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee........ee..................eeeeeeeee....eeeeeeeeeeeeeee.eeee..eeee...eeeeee.hhhhhhh......ee..eeeeee..eeeeee.hhh....ee.ee.........eee.................eeeeeeeeeeeeeee......eee....ee..........hhhhh....hhh.eeeeeee..............eeeeeee....eeeee..hhhhhh..eeeeeee..........eeeeee....eeeeee....hhhhh..hhhhhhhhhhhhhhhhhhh....eee....eeeee...eeeeeeeeee.....hhhhhhhhh......--------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....eeeee.eeehhhhheee..........eee...eeee........eeeee....eee.....eee.....eee......eeeee...eeeeehhhhh.........................hhhhhhhhh..hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwd A 104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPP--------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473   |     -       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723
                                                                                                                                                                                                                                                                                                                                                                                                               477            492                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:597
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:621
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724 
             GB_HHV1K   105 KAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIHA 725
               SCOP domains d3nwdb_ B: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee........ee...................eeeeeeee....eeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhhhhhhhhhhheee.eeeee....eeeee.hhh...eee.ee.........eee............---.eeeeeeeeeeeeeeee......ee.....ee.......hhhhhhhh.........eeeeeeeee......eeeeeeeeeeeee..eeeeee..........eeeeeee...eeee...eeeeee....eeeeee...........hhhhhhhhhhhhhhhhh.hhhhheee....eeeee...eeeeeeeeee.hhh------........---------------..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee.eeehhhhhee...........eee....ee............eee...eee.....eee.....eeeeee..eeeeee..eeeeeee.............................hhhhhhh....hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwd B 105 KAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVE---RYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLA------HLREQSRK---------------SVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIHA 725
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254     | 264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454      |  -   |   474|        -      |494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724 
                                                                                                                                                                                     260 264                                                                                                                                                                                                  461    468    475             491                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:601
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:620
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723
             GB_HHV1K   104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
               SCOP domains d3nwdc_ C: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee........ee...................eeeeeeee....eeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhhhhh......eee.eeeeee..eeeeee.hhh...eee.ee.........eee...........---....ee..eeeeeeeeee......ee.....ee..........hhhhh...........eeee..............eeeeeee....eeeee..........eeeeeee..ee......eeeeee....eeeeee....hhhhh...hhhhhhhhhhhhhhhhhh...........eeeee...eeeeeee..hhhhh.hhhhhhhhhh...----------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee....eeeee.eeehhh.eee............ee...eeee........eeee.hhh.ee......ee......eeeee....eeeee...eeeeehhhhh.........................hhhhhhhhh..hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwd C 104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRV---HRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRK----------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     | 263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473 |       -       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723
                                                                                                                                                                                     259 263                                                                                                                                                                                                                 475              492                                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:606
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723  
             GB_HHV1K   104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIHA 725
               SCOP domains d3nwdd_ D: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------Glycoprotein_B-3nwdD01 D:110-725                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) ------Glycoprotein_B-3nwdD02 D:110-725                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) ------Glycoprotein_B-3nwdD03 D:110-725                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) ------Glycoprotein_B-3nwdD04 D:110-725                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Pfam domains (4)
         Sec.struct. author .........eee....eeeeee...................eeeeeeee....eeeeeeeeeeeeeeeeee......eeeeeeeeeee.hhhhhhhhhhhhheee.eeeee....eeeee.hhh...eee.ee.........eee.............--.eeeeeeeeeeeeeeee......ee.....ee.......hhhhhhhh........eeeeeee..ee....ee....eeeeeee....eeeee..........eeeeeee...ee......eeeee....eeeee.....hhhhh..hhhhhhhhhhhhhhhhhhhh....ee....eeeee...eeeeeeeee...hhhhhhhhhhhh......--------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..eeeeee..eeeeee.eee....eee...........eee...eeee........eeee.hhhhh.......eee.....eeeeee..eeeeee..eeeeeee.hhh.........................hhhhhhhhh..hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwd D 104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEA--RYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPP--------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIHA 725
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       | -|      273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473   |     -       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723  
                                                                                                                                                                                       261  |                                                                                                                                                                                                                  477            492                                                                                                                                                                                                                                         
                                                                                                                                                                                          264
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NWD)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Glycoprotein_B] (4)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GB_HHV1K | P06437)
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0044177    host cell Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
    GO:0044178    host cell Golgi membrane    The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus.
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GB_HHV1K | P06437: 2gum 3nw8 3nwa 3nwf 3wv0 4bom 4hsi 4l1r 5fz2

(-) Related Entries Specified in the PDB File

2gum WT HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 7.5, TRYPSIN-CUT
3nw8 HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 8.5, Y179S MUTATION
3nwa HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5, W174R MUTATION
3nwf HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5