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(-) Description

Title :  GLYCOPROTEIN B FROM HERPES SIMPLEX VIRUS TYPE 1, Y179S MUTANT, HIGH-PH
 
Authors :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Date :  09 Jul 10  (Deposition) - 01 Dec 10  (Release) - 12 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.76
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B  (3x)
Biol. Unit 2:  A  (3x)
Biol. Unit 3:  C  (3x)
Biol. Unit 4:  D  (3x)
Keywords :  Envelope Glycoprotein, Membrane Fusion, Viral Protein, Glycoprotein B, Herpesvirus 1, Hsv-1, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Structural Basis Of Local, Ph-Dependent Conformational Changes In Glycoprotein B From Herpes Simplex Virus Type 1.
J. Virol. V. 84 12924 2010
PubMed-ID: 20943984  |  Reference-DOI: 10.1128/JVI.01750-10

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN B
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PVT-BAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: ECTODOMAIN (UNP RESIDUES 30 TO 730)
    Gene: GB, UL27
    Mutation: YES
    Organism Common: HHV-1
    Organism Scientific: HUMAN HERPESVIRUS 1
    Organism Taxid: 10306
    Strain: KOS
    Synonym: GB, GB-1, GB1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x):  B  
Biological Unit 2 (3x): A   
Biological Unit 3 (3x):   C 
Biological Unit 4 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 30)

Asymmetric Unit (4, 30)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MRY10Ligand/IonMESO-ERYTHRITOL
3NA4Ligand/IonSODIUM ION
4NAG15Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY6Ligand/IonMESO-ERYTHRITOL
3NA-1Ligand/IonSODIUM ION
4NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY12Ligand/IonMESO-ERYTHRITOL
3NA-1Ligand/IonSODIUM ION
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 21)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY9Ligand/IonMESO-ERYTHRITOL
3NA-1Ligand/IonSODIUM ION
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (2, 15)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MRY3Ligand/IonMESO-ERYTHRITOL
3NA-1Ligand/IonSODIUM ION
4NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU B:138 , ASN B:141BINDING SITE FOR RESIDUE NAG A 1141
02AC2SOFTWAREASN B:398 , ASN B:445BINDING SITE FOR RESIDUE NAG A 1398
03AC3SOFTWAREMET B:163 , ARG B:189 , THR B:291 , ASP B:293 , ASN B:709 , HIS B:712 , HOH B:750BINDING SITE FOR RESIDUE MRY A 2000
04AC4SOFTWAREASN B:153 , ALA B:155 , TYR B:284 , SER B:362 , VAL B:363 , CYS B:364BINDING SITE FOR RESIDUE MRY A 2001
05AC5SOFTWAREASN B:674BINDING SITE FOR RESIDUE NAG A 1674
06AC6SOFTWAREASP B:226BINDING SITE FOR RESIDUE NA A 2
07AC7SOFTWAREASN A:398 , LEU A:443 , ASN A:445BINDING SITE FOR RESIDUE NAG B 1398
08AC8SOFTWAREALA A:426 , ASN A:430BINDING SITE FOR RESIDUE NAG B 1430
09AC9SOFTWAREARG A:523 , ASN A:674 , THR A:676BINDING SITE FOR RESIDUE NAG B 1674
10BC1SOFTWARETYR A:165 , ARG A:189 , ASN A:709 , HIS A:712BINDING SITE FOR RESIDUE MRY B 2000
11BC2SOFTWAREASN A:153 , ALA A:155 , TYR A:284 , VAL A:363 , CYS A:364BINDING SITE FOR RESIDUE MRY B 2001
12BC3SOFTWAREASN A:511 , HIS A:512BINDING SITE FOR RESIDUE MRY B 2002
13BC4SOFTWAREASN A:141BINDING SITE FOR RESIDUE NAG B 1141
14BC5SOFTWARETHR A:312 , HOH A:758BINDING SITE FOR RESIDUE CL B 5
15BC6SOFTWAREARG B:304 , GLY B:324 , PRO B:339 , HOH B:761 , GLU A:195 , ASP A:199BINDING SITE FOR RESIDUE MRY B 731
16BC7SOFTWAREASN C:153 , TYR C:284 , SER C:362 , VAL C:363 , CYS C:364BINDING SITE FOR RESIDUE MRY C 2000
17BC8SOFTWAREARG C:245 , GLU C:275BINDING SITE FOR RESIDUE MRY C 2001
18BC9SOFTWAREASN C:398 , LEU C:443 , ASN C:445 , NAG C:1399BINDING SITE FOR RESIDUE NAG C 1398
19CC1SOFTWARENAG C:1398BINDING SITE FOR RESIDUE NAG C 1399
20CC2SOFTWAREALA C:426 , ASN C:430 , HOH C:760BINDING SITE FOR RESIDUE NAG C 1430
21CC3SOFTWAREARG C:523 , ASN C:674 , THR C:676 , HOH C:751BINDING SITE FOR RESIDUE NAG C 1674
22CC4SOFTWAREASP C:226 , ASP C:227 , HIS C:228BINDING SITE FOR RESIDUE MRY C 2002
23CC5SOFTWARELYS C:158 , PHE C:159 , ASP C:277 , ALA C:278BINDING SITE FOR RESIDUE NA C 4
24CC6SOFTWAREGLU D:138 , GLY D:139 , GLN D:140 , ASN D:141BINDING SITE FOR RESIDUE NAG D 1141
25CC7SOFTWAREASN D:398 , LEU D:443 , NAG D:1399BINDING SITE FOR RESIDUE NAG D 1398
26CC8SOFTWARENAG D:1398BINDING SITE FOR RESIDUE NAG D 1399
27CC9SOFTWAREALA D:426 , ARG D:427 , ASN D:430 , ALA D:431BINDING SITE FOR RESIDUE NAG D 1430
28DC1SOFTWARENA D:3 , ASN D:153 , PRO D:156 , TYR D:284 , CYS D:364 , HOH D:774BINDING SITE FOR RESIDUE MRY D 2000
29DC2SOFTWAREMET D:366 , MRY D:2000BINDING SITE FOR RESIDUE NA D 3

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:116 -A:573
2A:133 -A:529
3A:207 -A:271
4A:364 -A:412
5A:596 -A:633
6B:116 -B:573
7B:133 -B:529
8B:207 -B:271
9B:364 -B:412
10B:596 -B:633
11C:116 -C:573
12C:133 -C:529
13C:207 -C:271
14C:364 -C:412
15C:596 -C:633
16D:116 -D:573
17D:133 -D:529
18D:207 -D:271
19D:364 -D:412
20D:596 -D:633

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr B:282 -Pro B:283
2Tyr A:282 -Pro A:283
3Tyr C:282 -Pro C:283
4Tyr D:282 -Pro D:283

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NW8)

(-) Exons   (0, 0)

(no "Exon" information available for 3NW8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:607
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
             GB_HHV1K   103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nw8a_ A: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................................................................................hhhhhhhh........................hhh..............................................................................hhhhh....hhh........................................hhhhhh.......................................hhhhh..hhhhhhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhh.---------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhh................................................................................hhhhh.........................hhhhhhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nw8 A 103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKP---------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472   |     -       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
                                                                                                                                                                                                                                                                                                                                                                                                               476             492                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:606
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
             GB_HHV1K   103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nw8b_ B: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................................................................................hhhhhhhhhhhhh...................hhh...........................................................................hhhhhhhh...............................................hhhhhh.......................................hhhhh...hhhhhhhhhhhhhhhhhh..............................hhhhhhhhhhhhhhh..----------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................................................................................................................................hhhhhhhhh..hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nw8 B 103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRK----------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472  |      -       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
                                                                                                                                                                                                                                                                                                                                                                                                              475              492                                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:605
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:621
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723 
             GB_HHV1K   104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nw8c_ C: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................................................................................hhhhhhhhhhhhh...................hhh..............................................................................hhhhh....hhh.....................................................................................hhhhh...hhhhhhhhhhhhhhhh................................hhhhhhhhhhhhhhh..----------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhh..................................................................................hhh.........................hhhhhhh....hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nw8 C 104 IKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRK----------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473 |       -       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723 
                                                                                                                                                                                                                                                                                                                                                                                                             475              492                                                                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:609
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
             GB_HHV1K   103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nw8d_ D: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Glycoprotein_B-3nw8D01 D:110-724                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (1)
           Pfam domains (2) -------Glycoprotein_B-3nw8D02 D:110-724                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (2)
           Pfam domains (3) -------Glycoprotein_B-3nw8D03 D:110-724                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (3)
           Pfam domains (4) -------Glycoprotein_B-3nw8D04 D:110-724                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (4)
         Sec.struct. author ..........................................................................................hhhhhhhh........................hhh..............................................................................hhhhh...............................................hhhhhh.......................................hhhhh..hhhhhhhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhh....-------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................................................................................................................................hhhhhhhh...hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nw8 D 103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRSSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPN-------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     |   -       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
                                                                                                                                                                                                                                                                                                                                                                                                                 478           492
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NW8)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Glycoprotein_B] (4)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GB_HHV1K | P06437)
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0044177    host cell Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
    GO:0044178    host cell Golgi membrane    The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus.
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GB_HHV1K | P06437: 2gum 3nwa 3nwd 3nwf 3wv0 4bom 4hsi 4l1r 5fz2

(-) Related Entries Specified in the PDB File

2gum WT HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 7.5, TRYPSIN-CUT
3nwa HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5, W174R MUTATION
3nwd HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5, Y179S MUTATION
3nwf HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5