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(-) Description

Title :  GLYCOPROTEIN B FROM HERPES SIMPLEX VIRUS TYPE 1, LOW-PH
 
Authors :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Date :  09 Jul 10  (Deposition) - 01 Dec 10  (Release) - 28 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Biol. Unit 3:  C  (3x)
Biol. Unit 4:  D  (3x)
Keywords :  Coiled-Coil, Envelope Glycoprotein, Membrane Fusion, Viral Protein, Glycoprotein B, Herpesvirus 1, Hsv-1, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Stampfer, H. Lou, G. H. Cohen, R. J. Eisenberg, E. E. Heldwein
Structural Basis Of Local, Ph-Dependent Conformational Changes In Glycoprotein B From Herpes Simplex Virus Type 1.
J. Virol. V. 84 12924 2010
PubMed-ID: 20943984  |  Reference-DOI: 10.1128/JVI.01750-10

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN B
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PVT-BAC
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: ECTODOMAIN (UNP RESIDUES 30 TO 730)
    Gene: GB, UL27
    Organism Common: HHV-1
    Organism Scientific: HUMAN HERPESVIRUS 1
    Organism Taxid: 10306
    Strain: KOS
    Synonym: GB, GB-1, GB1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): A   
Biological Unit 2 (3x):  B  
Biological Unit 3 (3x):   C 
Biological Unit 4 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1MRY2Ligand/IonMESO-ERYTHRITOL
2NA1Ligand/IonSODIUM ION
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1MRY3Ligand/IonMESO-ERYTHRITOL
2NA-1Ligand/IonSODIUM ION
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1MRY3Ligand/IonMESO-ERYTHRITOL
2NA-1Ligand/IonSODIUM ION
3NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (1, 9)
No.NameCountTypeFull Name
1MRY-1Ligand/IonMESO-ERYTHRITOL
2NA-1Ligand/IonSODIUM ION
3NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MRY-1Ligand/IonMESO-ERYTHRITOL
2NA-1Ligand/IonSODIUM ION
3NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA B:426 , ASN B:430BINDING SITE FOR RESIDUE NAG B 1430
02AC2SOFTWAREALA B:237 , ASN B:238 , ALA B:240 , THR B:243 , SER B:244 , ARG B:245 , GLY B:246 , ARG B:715BINDING SITE FOR RESIDUE MRY B 4000
03AC3SOFTWAREASN A:398 , LEU A:443 , ASN A:445BINDING SITE FOR RESIDUE NAG A 1398
04AC4SOFTWAREARG A:523 , ASN A:674BINDING SITE FOR RESIDUE NAG A 1674
05AC5SOFTWARETYR A:165 , ARG A:189 , THR A:291 , ARG A:708 , ASN A:709 , HIS A:712BINDING SITE FOR RESIDUE MRY A 4000
06AC6SOFTWAREPRO B:236BINDING SITE FOR RESIDUE NA A 751
07AC7SOFTWAREGLU A:138 , GLY A:139 , GLN A:140 , ASN A:141BINDING SITE FOR RESIDUE NAG A 1141
08AC8SOFTWAREGLY C:139 , ASN C:141BINDING SITE FOR RESIDUE NAG C 1141
09AC9SOFTWAREASN C:398 , LEU C:443BINDING SITE FOR RESIDUE NAG C 1398
10BC1SOFTWAREARG C:523 , ASN C:674BINDING SITE FOR RESIDUE NAG C 1674
11BC2SOFTWAREGLU D:138 , GLY D:139 , GLN D:140 , ASN D:141BINDING SITE FOR RESIDUE NAG D 1141

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:116 -A:573
2A:133 -A:529
3A:207 -A:271
4A:364 -A:412
5A:596 -A:633
6B:116 -B:573
7B:133 -B:529
8B:207 -B:271
9B:364 -B:412
10B:596 -B:633
11C:116 -C:573
12C:133 -C:529
13C:207 -C:271
14C:364 -C:412
15C:596 -C:633
16D:116 -D:573
17D:133 -D:529
18D:207 -D:271
19D:364 -D:412
20D:596 -D:633

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:282 -Pro A:283
2Tyr B:282 -Pro B:283
3Tyr C:282 -Pro C:283
4Tyr D:282 -Pro D:283

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NWF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NWF)

(-) Exons   (0, 0)

(no "Exon" information available for 3NWF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:605
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
             GB_HHV1K   103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nwfa_ A: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eee...................eeeeeeee....eeee.eeeeeeeeeeeeee....eeeeeeeeeee..hhhhhhhhhhhhhee..eeeee....eeeee.hhh....ee.ee.........eee............--..eeeeeeeeee..eeee......ee.....ee........hhhhhhh........eeeeeee..............eeeeeeee..eeeeee..hhhhhh..eeeeeee..eeeeee..eeeeee....eeeee.....hhhhh..hhhhhhhhhhhhhhhhh......eee....eeeee...eeeeeeeeee.hhhhhhhhhhhhhhh...---------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee..eeeeee.eee....eee...........eee...eeee........eeeeee...eee.....eee......eeeee..eeeeee..eeeee.hhhhh.........................hhhhhhhh...hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwf A 103 DIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVE--HRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKP---------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       | -|      272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472   |     -       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722  
                                                                                                                                                                                       260  |                                                                                                                                                                                                                  476             492                                                                                                                                                                                                                                        
                                                                                                                                                                                          263                                                                                                                                                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:596
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:614
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720    
             GB_HHV1K   111 ANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nwfb_ B: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee........ee................ee.eeeeeeee....eeeeeeeeeeeeeeeeeee....eeeeeeeeeeee.hhhhhhhh.....eee.eeeeee..eeeeee.hhh...eee.ee.........eee...........---..eeeeeeeeeeeeeeee......eee....ee........hhhhhhh....hhh.eeeeeee..............eeeeeeee..eeeeee...hhhhh..eeeeeee...eeee....eeeee....eee.......hhhhh...hhhhhhhhhhhhhhhhhhh..........eeeee...eeeeeee..hhhhhhhhhhhhhhhh....---------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....eeeee.eeehhh.eeee..........eee...eeee........eeeee....eee.....eee.....eeeeee..eeeeee..eeeeeee.hhh.........................hhhhhhhh...hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwf B 111 ANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRV---HRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKP---------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250        |-  |    270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     |   -         - |     500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720    
                                                                                                                                                                              259 263                                                                                                                                                                                                                  476             492                                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:603
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:623
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721   
             GB_HHV1K   102 RDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
               SCOP domains d3nwfc_ C: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.......eee...................eeeeeeee....eeee.eeeeeeeeeeeeee....eeeeeeeeeee..hhhhhhhhhhhhhee..eeeee....eeeee.hhh....ee.ee.........eee............----.eeeeeeeee..eeee......ee.....ee...................hhhhh..eeee..............eeeeeeee..eeeeee...hhhhh..eeeeeee..eeeee...eeeeee....eeeeee....hhhhh...hhhhhhhhhhhhhhhh......eee....eeeee...eeeeeeeeee.hhhhhhhhhhhhhhhh.----------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee.eeehhh.eee...........eee...eeee........eeeee....eee.....eee.....eeeeee..eeeeee..eeeeeee.............................hhhhhhh....hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwf C 102 RDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVE----YGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRK----------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIH 724
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251        |-   |   271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471   |     -         -|      501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721   
                                                                                                                                                                                        260  265                                                                                                                                                                                                               475              492                                                                                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:605
 aligned with GB_HHV1K | P06437 from UniProtKB/Swiss-Prot  Length:904

    Alignment length:622
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721  
             GB_HHV1K   102 RDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
               SCOP domains d3nwfd_ D: Glycoprotein B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------Glycoprotein_B-3nwfD01 D:110-723                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (1)
           Pfam domains (2) --------Glycoprotein_B-3nwfD02 D:110-723                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (2)
           Pfam domains (3) --------Glycoprotein_B-3nwfD03 D:110-723                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (3)
           Pfam domains (4) --------Glycoprotein_B-3nwfD04 D:110-723                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       Pfam domains (4)
         Sec.struct. author ...........eee........ee................ee.eeeeeeee....eeeeeeeeeeeeeee.eee....eee...eeeeee.hhhhhhhhhhh..eee.eeeeee..eeeeee.hhh...eee.ee.........eee...........---...eeeeeeeeeeeeeee......eee....ee........hhhhhh.....hhhhh..eeee..............eeeeeee....eeeee..........eeeeeee...eeee....eeeee....eeeee..............hhhhhhhhhhhhhhhhhh...eee....eeeee...eeeeeeeeee.hhhhhhhhhhhhhhh....--------------.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee.eeehhh.eee...........eee...eeee........eeeee....eee.....eee.....eeeeee..eeeeee...eeeeee.hhh.........................hhhhhhh....hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwf D 102 RDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRAPVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRV---HRYGTTVNCIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTSYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKFTVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYNATHIKVGQPQYYLANGGFLIAYQPLLSNTLAELYVREHLREQSRKPP--------------VERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRISSRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVI 723
                                   111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       | - |     271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471     |   -         -|      501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721  
                                                                                                                                                                                       259 263                                                                                                                                                                                                                   477            492
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NWF)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Glycoprotein_B] (4)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GB_HHV1K | P06437)
biological process
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0044177    host cell Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic host cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack.
    GO:0044178    host cell Golgi membrane    The lipid bilayer surrounding any of the compartments of the host cell Golgi apparatus.
    GO:0044174    host cell endosome    A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
    GO:0044175    host cell endosome membrane    The lipid bilayer surrounding a host cell endosome.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GB_HHV1K | P06437: 2gum 3nw8 3nwa 3nwd 3wv0 4bom 4hsi 4l1r 5fz2

(-) Related Entries Specified in the PDB File

2gum WT HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 7.5, TRYPSIN-CUT
3nw8 HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 8.5, Y179S MUTATION
3nwa HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5, W174R MUTATION
3nwd HSV-1 GLYCOPROTEIN B ECTODOMAIN AT PH 5.5, Y179S MUTATION