Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BF3042) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.87 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Jun 10  (Deposition) - 18 Aug 10  (Release) - 18 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B  (2x)
Biol. Unit 6:  C,D  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein (Bf3042) From Bacteroides Fragilis Nctc 9343 At 1. 87 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF3042
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (2x): AB  
Biological Unit 6 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 52)

Asymmetric Unit (5, 52)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CD20Ligand/IonCADMIUM ION
3CL9Ligand/IonCHLORIDE ION
4MSE8Mod. Amino AcidSELENOMETHIONINE
5PEG11Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (3, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 5 (3, 28)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE8Mod. Amino AcidSELENOMETHIONINE
5PEG16Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 6 (3, 18)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
4MSE8Mod. Amino AcidSELENOMETHIONINE
5PEG6Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (44, 44)

Asymmetric Unit (44, 44)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:184 , ILE A:186 , HOH A:384 , HOH A:530 , HOH A:678BINDING SITE FOR RESIDUE CD A 300
02AC2SOFTWAREASP A:97 , CL A:328 , HOH A:347 , HOH A:354 , HOH A:356 , HOH A:496BINDING SITE FOR RESIDUE CD A 301
03AC3SOFTWAREGLU A:160 , GLU A:196 , CL A:323 , MSE B:43BINDING SITE FOR RESIDUE CD A 302
04AC4SOFTWAREGLU A:142 , GLU A:267 , HOH A:489 , GLU B:223 , HOH B:705BINDING SITE FOR RESIDUE CD A 307
05AC5SOFTWAREILE A:186 , LYS A:235 , ILE B:186 , LYS B:235BINDING SITE FOR RESIDUE CL A 321
06AC6SOFTWAREGLU A:160 , GLU A:196 , CD A:302 , MSE B:43BINDING SITE FOR RESIDUE CL A 323
07AC7SOFTWAREVAL A:64 , THR A:65 , LEU A:66 , ASP A:97 , CD A:301BINDING SITE FOR RESIDUE CL A 328
08AC8SOFTWARETYR A:72 , ILE A:101 , SER A:210 , SER A:211 , PHE A:212BINDING SITE FOR RESIDUE PEG A 329
09AC9SOFTWAREASP A:50 , ALA A:51 , PHE A:140 , SER A:141BINDING SITE FOR RESIDUE PEG A 332
10BC1SOFTWAREGLN A:139 , PHE A:140 , THR A:265 , ALA A:266BINDING SITE FOR RESIDUE PEG A 333
11BC2SOFTWAREGLN A:241 , LEU A:249 , GLU A:250 , HOH A:477 , HOH A:556 , HOH A:631BINDING SITE FOR RESIDUE PEG A 337
12BC3SOFTWAREGLU A:223 , GLU B:142 , GLU B:267 , HOH B:412BINDING SITE FOR RESIDUE CD B 303
13BC4SOFTWAREHOH A:520 , ASP B:184 , ILE B:186 , HOH B:397 , HOH B:674BINDING SITE FOR RESIDUE CD B 304
14BC5SOFTWAREASP B:97 , CL B:325 , HOH B:350 , HOH B:357 , HOH B:362 , HOH B:448BINDING SITE FOR RESIDUE CD B 305
15BC6SOFTWAREMSE A:43 , GLU B:160 , GLU B:196 , ACT B:342BINDING SITE FOR RESIDUE CD B 306
16BC7SOFTWAREGLU B:262 , LYS C:235 , GLU C:260BINDING SITE FOR RESIDUE CD B 308
17BC8SOFTWAREGLU B:198 , HOH B:613 , GLU C:79BINDING SITE FOR RESIDUE CD B 309
18BC9SOFTWAREGLU B:113 , HOH B:627 , LYS D:110 , GLU D:113BINDING SITE FOR RESIDUE CD B 318
19CC1SOFTWAREGLU A:260 , HOH A:429 , GLU B:260 , HOH B:464BINDING SITE FOR RESIDUE CD B 319
20CC2SOFTWAREASN A:60 , ASN B:60BINDING SITE FOR RESIDUE CL B 320
21CC3SOFTWARESER B:141 , THR B:144 , HOH B:683BINDING SITE FOR RESIDUE CL B 322
22CC4SOFTWAREVAL B:64 , THR B:65 , LEU B:66 , ASP B:97 , CD B:305BINDING SITE FOR RESIDUE CL B 325
23CC5SOFTWAREGLN B:139 , PHE B:140 , LYS B:264BINDING SITE FOR RESIDUE PEG B 330
24CC6SOFTWARETHR B:49 , ASP B:50 , ALA B:51 , PHE B:140 , HOH B:683BINDING SITE FOR RESIDUE PEG B 331
25CC7SOFTWAREGLN B:241 , LEU B:249 , GLU B:250 , THR B:254BINDING SITE FOR RESIDUE PEG B 335
26CC8SOFTWARELYS A:181 , LYS B:110 , VAL B:111 , ASP B:179 , TYR B:190 , ARG B:192BINDING SITE FOR RESIDUE PEG B 336
27CC9SOFTWARESER B:211 , PHE B:212 , HOH B:696BINDING SITE FOR RESIDUE ACT B 341
28DC1SOFTWAREMSE A:43 , THR B:158 , THR B:159 , GLU B:160 , GLU B:196 , CD B:306BINDING SITE FOR RESIDUE ACT B 342
29DC2SOFTWAREASP C:97 , CL C:326 , HOH C:359 , HOH C:392 , HOH C:408 , HOH C:541BINDING SITE FOR RESIDUE CD C 310
30DC3SOFTWAREGLU C:160 , GLU C:196 , ACT C:343 , MSE D:43BINDING SITE FOR RESIDUE CD C 311
31DC4SOFTWAREHOH B:707 , GLU C:262 , CL C:324BINDING SITE FOR RESIDUE CD C 313
32DC5SOFTWAREGLU C:142 , GLU C:267 , HOH C:355 , GLU D:223BINDING SITE FOR RESIDUE CD C 316
33DC6SOFTWARELYS B:232 , THR B:265 , HOH B:707 , GLU C:262 , LYS C:264 , CD C:313BINDING SITE FOR RESIDUE CL C 324
34DC7SOFTWAREVAL C:64 , THR C:65 , LEU C:66 , ASP C:97 , PRO C:98 , CD C:310BINDING SITE FOR RESIDUE CL C 326
35DC8SOFTWAREILE C:101 , SER C:210 , SER C:211 , PHE C:212BINDING SITE FOR RESIDUE PEG C 334
36DC9SOFTWAREGLN C:241 , GLU C:250 , THR C:254 , GLU C:256BINDING SITE FOR RESIDUE PEG C 338
37EC1SOFTWARETHR C:158 , THR C:159 , GLU C:160 , GLU C:196 , CD C:311 , HOH C:668 , MSE D:43BINDING SITE FOR RESIDUE ACT C 343
38EC2SOFTWAREGLU C:223 , GLU D:142 , GLU D:267 , ACT D:340BINDING SITE FOR RESIDUE CD D 312
39EC3SOFTWAREASP D:97 , CL D:327 , HOH D:495 , HOH D:514 , HOH D:515BINDING SITE FOR RESIDUE CD D 314
40EC4SOFTWAREMSE C:43 , THR D:159 , GLU D:160 , GLU D:196BINDING SITE FOR RESIDUE CD D 315
41EC5SOFTWAREGLU A:79 , GLU D:198BINDING SITE FOR RESIDUE CD D 317
42EC6SOFTWAREVAL D:64 , THR D:65 , LEU D:66 , ASP D:97 , CD D:314BINDING SITE FOR RESIDUE CL D 327
43EC7SOFTWAREGLN D:241 , LEU D:249 , GLU D:250 , THR D:254BINDING SITE FOR RESIDUE PEG D 339
44EC8SOFTWAREGLU C:223 , GLU D:142 , ALA D:266 , GLU D:267 , CD D:312BINDING SITE FOR RESIDUE ACT D 340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NQI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NQI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NQI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NQI)

(-) Exons   (0, 0)

(no "Exon" information available for 3NQI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with Q5LAY5_BACFN | Q5LAY5 from UniProtKB/TrEMBL  Length:267

    Alignment length:238
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
         Q5LAY5_BACFN    30 PQQWAGVVKVNDRMGYVTFTDAAGTELIPTNTIPVTLNARMAYIYCQVDEGQDLSTNPKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..eeeee.....eeee...........eeeeeeee....------.eeeeee....ee.ee.eeee...................eee..eee..eeee..eeeeeeeeee....hhhhhhhhhh.eeeeeeee.hhh.....eeeeeeeeee..hhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.....eeeeeeee............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqi A  30 PQQWAGVVKVNDRmGYVTFTDAAGTELIPTNTIPVTLNARmAYIYCQVDEGQ------KSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
                                    39   |    49        59        69|       79 |      89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
                                        43-MSE                     70-MSE     81     88                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:230
 aligned with Q5LAY5_BACFN | Q5LAY5 from UniProtKB/TrEMBL  Length:267

    Alignment length:237
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
         Q5LAY5_BACFN    31 QQWAGVVKVNDRMGYVTFTDAAGTELIPTNTIPVTLNARMAYIYCQVDEGQDLSTNPKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee..eeeee.....eeee...........eeeeeeee....-----..eeeeee....ee....eeee.....................--......eeee..eeeeeeeeee....hhhhhhhhhh.eeeeeeee.hhh.....eeeeeeeeee..hhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.....eeeeeeee............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqi B  31 QQWAGVVKVNDRmGYVTFTDAAGTELIPTNTIPVTLNARmAYIYCQVDEGQ-----PKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFV--YSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
                                    40  |     50        60        70        80|     | 90       100       110       120        |- |     140       150       160       170       180       190       200       210       220       230       240       250       260       
                                       43-MSE                     70-MSE     81    87                                       129  |                                                                                                                                       
                                                                                                                               132                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:230
 aligned with Q5LAY5_BACFN | Q5LAY5 from UniProtKB/TrEMBL  Length:267

    Alignment length:238
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
         Q5LAY5_BACFN    30 PQQWAGVVKVNDRMGYVTFTDAAGTELIPTNTIPVTLNARMAYIYCQVDEGQDLSTNPKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..eeeee.....eeee...........eeeeeeee..--------.eeeeee....ee....eeee...................eee..eee..eeee..eeeeeeeeee....hhhhhhhhhh.eeeeeeee.hhh.....eeeeeeeeee..hhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.....eeeeeeee............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqi C  30 PQQWAGVVKVNDRmGYVTFTDAAGTELIPTNTIPVTLNARmAYIYCQVDE--------KSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
                                    39   |    49        59        69|       79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259        
                                        43-MSE                     70-MSE   79       88                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:230
 aligned with Q5LAY5_BACFN | Q5LAY5 from UniProtKB/TrEMBL  Length:267

    Alignment length:237
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
         Q5LAY5_BACFN    31 QQWAGVVKVNDRMGYVTFTDAAGTELIPTNTIPVTLNARMAYIYCQVDEGQDLSTNPKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------NigD-3nqiD01 D:38-253                                                                                                                                                                                                   -------------- Pfam domains (1)
           Pfam domains (2) -------NigD-3nqiD02 D:38-253                                                                                                                                                                                                   -------------- Pfam domains (2)
           Pfam domains (3) -------NigD-3nqiD03 D:38-253                                                                                                                                                                                                   -------------- Pfam domains (3)
           Pfam domains (4) -------NigD-3nqiD04 D:38-253                                                                                                                                                                                                   -------------- Pfam domains (4)
         Sec.struct. author .eeeeeeeeeee..eeeee.....eeee...........eeeeeeee..-------..eeeeee....ee....eeee...................eee..eee..ee....eeeeeeeeee....hhhhhhhhhh.eeeeeeee.hhh.....eeeeeeeeee..hhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.....eeeeeeee............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nqi D  31 QQWAGVVKVNDRmGYVTFTDAAGTELIPTNTIPVTLNARmAYIYCQVDE-------PKSIKITLLADPTGIDATAITTPKVGESGDVTTNAPVGSLSFVSGYSTVAPFQFSENTIVLPVLYRVKNVTTTEDIKNELAKHTFTLVCYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITIVAQQNEYNNKLEDTSTIEKVYEIEYKTAE 267
                                    40  |     50        60        70        |-      | 90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       
                                       43-MSE                     70-MSE   79      87
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NQI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NQI)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: NigD] (4)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NQI)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3nqi)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3nqi
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5LAY5_BACFN | Q5LAY5
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q5LAY5_BACFN | Q5LAY5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3NQI)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3NQI)