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3NQI
Biol. Unit 6
Info
Asym.Unit (329 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
Biol.Unit 5 (319 KB)
Biol.Unit 6 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BF3042) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.87 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Jun 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (2x)
Biol. Unit 6: C,D (2x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein (Bf3042) From Bacteroides Fragilis Nctc 9343 At 1. 87 A Resolution
To Be Published
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
5
PEG
6
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(19, 19)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: DC2 (SOFTWARE)
05: DC3 (SOFTWARE)
06: DC4 (SOFTWARE)
07: DC5 (SOFTWARE)
08: DC6 (SOFTWARE)
09: DC7 (SOFTWARE)
10: DC8 (SOFTWARE)
11: DC9 (SOFTWARE)
12: EC1 (SOFTWARE)
13: EC2 (SOFTWARE)
14: EC3 (SOFTWARE)
15: EC4 (SOFTWARE)
16: EC5 (SOFTWARE)
17: EC6 (SOFTWARE)
18: EC7 (SOFTWARE)
19: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
GLU B:262 , LYS C:235 , GLU C:260
BINDING SITE FOR RESIDUE CD B 308
02
BC8
SOFTWARE
GLU B:198 , HOH B:613 , GLU C:79
BINDING SITE FOR RESIDUE CD B 309
03
BC9
SOFTWARE
GLU B:113 , HOH B:627 , LYS D:110 , GLU D:113
BINDING SITE FOR RESIDUE CD B 318
04
DC2
SOFTWARE
ASP C:97 , CL C:326 , HOH C:359 , HOH C:392 , HOH C:408 , HOH C:541
BINDING SITE FOR RESIDUE CD C 310
05
DC3
SOFTWARE
GLU C:160 , GLU C:196 , ACT C:343 , MSE D:43
BINDING SITE FOR RESIDUE CD C 311
06
DC4
SOFTWARE
HOH B:707 , GLU C:262 , CL C:324
BINDING SITE FOR RESIDUE CD C 313
07
DC5
SOFTWARE
GLU C:142 , GLU C:267 , HOH C:355 , GLU D:223
BINDING SITE FOR RESIDUE CD C 316
08
DC6
SOFTWARE
LYS B:232 , THR B:265 , HOH B:707 , GLU C:262 , LYS C:264 , CD C:313
BINDING SITE FOR RESIDUE CL C 324
09
DC7
SOFTWARE
VAL C:64 , THR C:65 , LEU C:66 , ASP C:97 , PRO C:98 , CD C:310
BINDING SITE FOR RESIDUE CL C 326
10
DC8
SOFTWARE
ILE C:101 , SER C:210 , SER C:211 , PHE C:212
BINDING SITE FOR RESIDUE PEG C 334
11
DC9
SOFTWARE
GLN C:241 , GLU C:250 , THR C:254 , GLU C:256
BINDING SITE FOR RESIDUE PEG C 338
12
EC1
SOFTWARE
THR C:158 , THR C:159 , GLU C:160 , GLU C:196 , CD C:311 , HOH C:668 , MSE D:43
BINDING SITE FOR RESIDUE ACT C 343
13
EC2
SOFTWARE
GLU C:223 , GLU D:142 , GLU D:267 , ACT D:340
BINDING SITE FOR RESIDUE CD D 312
14
EC3
SOFTWARE
ASP D:97 , CL D:327 , HOH D:495 , HOH D:514 , HOH D:515
BINDING SITE FOR RESIDUE CD D 314
15
EC4
SOFTWARE
MSE C:43 , THR D:159 , GLU D:160 , GLU D:196
BINDING SITE FOR RESIDUE CD D 315
16
EC5
SOFTWARE
GLU A:79 , GLU D:198
BINDING SITE FOR RESIDUE CD D 317
17
EC6
SOFTWARE
VAL D:64 , THR D:65 , LEU D:66 , ASP D:97 , CD D:314
BINDING SITE FOR RESIDUE CL D 327
18
EC7
SOFTWARE
GLN D:241 , LEU D:249 , GLU D:250 , THR D:254
BINDING SITE FOR RESIDUE PEG D 339
19
EC8
SOFTWARE
GLU C:223 , GLU D:142 , ALA D:266 , GLU D:267 , CD D:312
BINDING SITE FOR RESIDUE ACT D 340
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NigD_3nqiD01 (D:38-253)
1b: PFAM_NigD_3nqiD02 (D:38-253)
1c: PFAM_NigD_3nqiD03 (D:38-253)
1d: PFAM_NigD_3nqiD04 (D:38-253)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NigD]
(4)
Family
:
NigD
(4)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(1)
1a
NigD-3nqiD01
D:38-253
1b
NigD-3nqiD02
D:38-253
1c
NigD-3nqiD03
D:38-253
1d
NigD-3nqiD04
D:38-253
[
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]
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Asym.Unit (329 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
Biol.Unit 3 (83 KB)
Header - Biol.Unit 3
Biol.Unit 4 (82 KB)
Header - Biol.Unit 4
Biol.Unit 5 (319 KB)
Header - Biol.Unit 5
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