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3NQI
Biol. Unit 2
Info
Asym.Unit (329 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
Biol.Unit 5 (319 KB)
Biol.Unit 6 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN (BF3042) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.87 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
29 Jun 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (2x)
Biol. Unit 6: C,D (2x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein (Bf3042) From Bacteroides Fragilis Nctc 9343 At 1. 87 A Resolution
To Be Published
[
close entry info
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
3i: CHLORIDE ION (CLi)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
5k: DI(HYDROXYETHYL)ETHER (PEGk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
5
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC5 (SOFTWARE)
17: CC6 (SOFTWARE)
18: CC7 (SOFTWARE)
19: CC8 (SOFTWARE)
20: CC9 (SOFTWARE)
21: DC1 (SOFTWARE)
22: DC4 (SOFTWARE)
23: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLU A:160 , GLU A:196 , CL A:323 , MSE B:43
BINDING SITE FOR RESIDUE CD A 302
02
AC4
SOFTWARE
GLU A:142 , GLU A:267 , HOH A:489 , GLU B:223 , HOH B:705
BINDING SITE FOR RESIDUE CD A 307
03
AC5
SOFTWARE
ILE A:186 , LYS A:235 , ILE B:186 , LYS B:235
BINDING SITE FOR RESIDUE CL A 321
04
AC6
SOFTWARE
GLU A:160 , GLU A:196 , CD A:302 , MSE B:43
BINDING SITE FOR RESIDUE CL A 323
05
BC3
SOFTWARE
GLU A:223 , GLU B:142 , GLU B:267 , HOH B:412
BINDING SITE FOR RESIDUE CD B 303
06
BC4
SOFTWARE
HOH A:520 , ASP B:184 , ILE B:186 , HOH B:397 , HOH B:674
BINDING SITE FOR RESIDUE CD B 304
07
BC5
SOFTWARE
ASP B:97 , CL B:325 , HOH B:350 , HOH B:357 , HOH B:362 , HOH B:448
BINDING SITE FOR RESIDUE CD B 305
08
BC6
SOFTWARE
MSE A:43 , GLU B:160 , GLU B:196 , ACT B:342
BINDING SITE FOR RESIDUE CD B 306
09
BC7
SOFTWARE
GLU B:262 , LYS C:235 , GLU C:260
BINDING SITE FOR RESIDUE CD B 308
10
BC8
SOFTWARE
GLU B:198 , HOH B:613 , GLU C:79
BINDING SITE FOR RESIDUE CD B 309
11
BC9
SOFTWARE
GLU B:113 , HOH B:627 , LYS D:110 , GLU D:113
BINDING SITE FOR RESIDUE CD B 318
12
CC1
SOFTWARE
GLU A:260 , HOH A:429 , GLU B:260 , HOH B:464
BINDING SITE FOR RESIDUE CD B 319
13
CC2
SOFTWARE
ASN A:60 , ASN B:60
BINDING SITE FOR RESIDUE CL B 320
14
CC3
SOFTWARE
SER B:141 , THR B:144 , HOH B:683
BINDING SITE FOR RESIDUE CL B 322
15
CC4
SOFTWARE
VAL B:64 , THR B:65 , LEU B:66 , ASP B:97 , CD B:305
BINDING SITE FOR RESIDUE CL B 325
16
CC5
SOFTWARE
GLN B:139 , PHE B:140 , LYS B:264
BINDING SITE FOR RESIDUE PEG B 330
17
CC6
SOFTWARE
THR B:49 , ASP B:50 , ALA B:51 , PHE B:140 , HOH B:683
BINDING SITE FOR RESIDUE PEG B 331
18
CC7
SOFTWARE
GLN B:241 , LEU B:249 , GLU B:250 , THR B:254
BINDING SITE FOR RESIDUE PEG B 335
19
CC8
SOFTWARE
LYS A:181 , LYS B:110 , VAL B:111 , ASP B:179 , TYR B:190 , ARG B:192
BINDING SITE FOR RESIDUE PEG B 336
20
CC9
SOFTWARE
SER B:211 , PHE B:212 , HOH B:696
BINDING SITE FOR RESIDUE ACT B 341
21
DC1
SOFTWARE
MSE A:43 , THR B:158 , THR B:159 , GLU B:160 , GLU B:196 , CD B:306
BINDING SITE FOR RESIDUE ACT B 342
22
DC4
SOFTWARE
HOH B:707 , GLU C:262 , CL C:324
BINDING SITE FOR RESIDUE CD C 313
23
DC6
SOFTWARE
LYS B:232 , THR B:265 , HOH B:707 , GLU C:262 , LYS C:264 , CD C:313
BINDING SITE FOR RESIDUE CL C 324
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NigD_3nqiD01 (D:38-253)
1b: PFAM_NigD_3nqiD02 (D:38-253)
1c: PFAM_NigD_3nqiD03 (D:38-253)
1d: PFAM_NigD_3nqiD04 (D:38-253)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NigD]
(4)
Family
:
NigD
(4)
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
(1)
1a
NigD-3nqiD01
D:38-253
1b
NigD-3nqiD02
D:38-253
1c
NigD-3nqiD03
D:38-253
1d
NigD-3nqiD04
D:38-253
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Asymmetric Unit 1
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