3NEY - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF MPP1/P55

Authors :   Y. Shen, Y. Tong, N. Zhong, X. Guan, W. Tempel, F. Mackenzie, C. H. Arrows A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structur Genomics Consortium (Sgc)

Date :   09 Jun 10 (Deposition) - 04 Aug 10 (Release) - 12 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.26

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: F  (1x)
Biol. Unit 6: E  (1x)

Keywords :   Structural Genomics Consortium, Sgc, 55 Kda Erythrocyte Membrane Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Shen, Y. Tong, N. Zhong, X. Guan, W. Tempel, F. Mackenzie, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Kinase Domain Of Mpp1/P55
To Be Published
PubMed: search

Molecule 1 - 55 KDA ERYTHROCYTE MEMBRANE PROTEIN
	Chains	:	A, B, C, D, F, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-MHL
	Expression System Strain	:	BL21-V2R-PRARE2
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	KINASE DOMAIN, RESIDUES 282-460
	Gene	:	MPP1, DXS552E, EMP55
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	P55, MEMBRANE PROTEIN, PALMITOYLATED 1

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:						F
Biological Unit 6 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 43)

No.	Name	Count	Type	Full Name
1	SO4	12	Ligand/Ion	SULFATE ION
2	UNX	31	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION
2	UNX	7	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION
2	UNX	6	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION
2	UNX	5	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 4 (2, 7)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION
2	UNX	5	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 5 (2, 5)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION
2	UNX	4	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 6 (2, 5)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION
2	UNX	4	Ligand/Ion	UNKNOWN ATOM OR ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH A:48 , HOH A:175 , ALA A:290 , SER A:291 , GLY A:292 , VAL A:293 , GLY A:294 , ARG A:295 , SER A:296	BINDING SITE FOR RESIDUE SO4 A 3
02	AC2	SOFTWARE	ARG A:389 , HIS A:428	BINDING SITE FOR RESIDUE SO4 A 4
03	AC3	SOFTWARE	ARG B:389 , HIS B:428	BINDING SITE FOR RESIDUE SO4 B 5
04	AC4	SOFTWARE	ARG B:282 , ALA B:453 , CYS B:454	BINDING SITE FOR RESIDUE SO4 B 6
05	AC5	SOFTWARE	SER B:291 , GLY B:292 , VAL B:293 , GLY B:294 , ARG B:295 , SER B:296	BINDING SITE FOR RESIDUE SO4 B 7
06	AC6	SOFTWARE	HIS B:297 , ASN B:300	BINDING SITE FOR RESIDUE SO4 B 8
07	AC7	SOFTWARE	SER C:291 , GLY C:292 , VAL C:293 , GLY C:294 , ARG C:295 , SER C:296	BINDING SITE FOR RESIDUE SO4 C 1
08	AC8	SOFTWARE	ARG C:389 , HIS C:428	BINDING SITE FOR RESIDUE SO4 C 9
09	AC9	SOFTWARE	HOH D:14 , HOH D:25 , HOH D:163 , SER D:291 , GLY D:292 , VAL D:293 , GLY D:294 , ARG D:295 , SER D:296 , HOH D:461	BINDING SITE FOR RESIDUE SO4 D 2
10	BC1	SOFTWARE	ARG D:389 , HIS D:428	BINDING SITE FOR RESIDUE SO4 D 10
11	BC2	SOFTWARE	ARG F:389 , HIS F:428	BINDING SITE FOR RESIDUE SO4 F 11
12	BC3	SOFTWARE	ARG E:389 , HIS E:428	BINDING SITE FOR RESIDUE SO4 E 12

Asymmetric Unit

No.	Residues
1	A:454	-	B:454
2	C:454	-	D:454
3	F:454	-	E:454

(no "Cis Peptide Bond" information available for 3NEY)

Asymmetric Unit (1, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	A/B/C/D/E/F	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	A	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	B	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	C	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	D	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	F	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_011914	E	448	Q	EM55_HUMAN	Polymorphism	14092	E	E	448	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	6	A:282-451 B:282-451 C:282-451 D:282-451 E:282-451 F:282-451
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	6	A:317-334 B:317-334 C:317-334 D:317-334 E:317-334 F:317-334

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	A:282-451 - - - - -
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	A:317-334 - - - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	- B:282-451 - - - -
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	- B:317-334 - - - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	- - C:282-451 - - -
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	- - C:317-334 - - -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	- - - D:282-451 - -
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	- - - D:317-334 - -

Biological Unit 5 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	- - - - - F:282-451
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	- - - - - F:317-334

Biological Unit 6 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GUANYLATE_KINASE_2	PS50052	Guanylate kinase-like domain profile.	EM55_HUMAN	282-451	1	- - - - E:282-451 -
2	GUANYLATE_KINASE_1	PS00856	Guanylate kinase-like signature.	EM55_HUMAN	317-334	1	- - - - E:317-334 -

Asymmetric Unit (6, 35)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2b	ENST00000369534	2b	ENSE00001842847	X:154033796-154033547	250	EM55_HUMAN	1-34	34	0	-	-
1.5c	ENST00000369534	5c	ENSE00001622979	X:154020560-154020417	144	EM55_HUMAN	35-82	48	0	-	-
1.6a	ENST00000369534	6a	ENSE00001697405	X:154020122-154020044	79	EM55_HUMAN	83-109	27	0	-	-
1.7b	ENST00000369534	7b	ENSE00001607029	X:154019343-154019258	86	EM55_HUMAN	109-137	29	0	-	-
1.8b	ENST00000369534	8b	ENSE00002179637	X:154018297-154018229	69	EM55_HUMAN	138-160	23	0	-	-
1.9c	ENST00000369534	9c	ENSE00001675460	X:154014675-154014479	197	EM55_HUMAN	161-226	66	5	A:279-281 B:279-281 C:279-281 D:279-281 E:279-281 -	3 3 3 3 3 -
1.10d	ENST00000369534	10d	ENSE00001691038	X:154013432-154013326	107	EM55_HUMAN	226-262	37	0	-	-
1.11b	ENST00000369534	11b	ENSE00001641741	X:154012383-154012303	81	EM55_HUMAN	262-289	28	6	A:282-289 B:282-289 C:282-289 D:282-289 E:282-289 F:281-289	8 8 8 8 8 9
1.12a	ENST00000369534	12a	ENSE00001684797	X:154011782-154011702	81	EM55_HUMAN	289-316	28	6	A:289-316 B:289-316 C:289-316 D:289-316 E:289-316 F:289-316	28 28 28 28 28 28
1.12g	ENST00000369534	12g	ENSE00001658958	X:154010077-154009875	203	EM55_HUMAN	316-383	68	6	A:316-383 B:316-383 C:316-383 D:316-383 E:316-383 F:316-383 (gaps)	68 68 68 68 68 68
1.13b	ENST00000369534	13b	ENSE00001612210	X:154009588-154009514	75	EM55_HUMAN	384-408	25	6	A:384-408 B:384-408 C:384-408 D:384-408 E:384-408 F:384-408	25 25 25 25 25 25
1.14e	ENST00000369534	14e	ENSE00001863406	X:154007628-154006959	670	EM55_HUMAN	409-466	58	6	A:409-458 B:409-458 C:409-458 D:409-458 E:409-458 F:409-458	50 50 50 50 50 50

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:180
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:256
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
           EM55_HUMAN   203 WQGRVEGSSKESAGLIPSPELQEWRVASMAQSAPSEAPSCSPFGKKKKYKDKYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3n                                                                            eya_ A: automated matches                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----------------------------------------------------------------------------..eeeee.....hhhhhhhhhhhhh...ee....ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------GUANYLATE_KINASE_2  PDB: A:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -----------------------Exon 1.10d  PDB: - UniProt: 226-262  --------------------------Exon 1.12a  PDB: A:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: A:384-40Exon 1.14e  PDB: A:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) Exon 1.9c  PDB: A:279-28-----------------------------------Exon 1.11b  PDB: A:282-289  --------------------------Exon 1.12g  PDB: A:316-383 UniProt: 316-383                         --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney A 279 FQG----------------------------------------------------------------------------RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                              |      -         -         -         -         -         -         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                              |                                                                          282                                                                                                                                                                                
                            281

Chain B from PDB  Type:PROTEIN  Length:180
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:256
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
           EM55_HUMAN   203 WQGRVEGSSKESAGLIPSPELQEWRVASMAQSAPSEAPSCSPFGKKKKYKDKYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3n                                                                            eyb_ B: automated matches                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----------------------------------------------------------------------------..eeeee.....hhhhhhhhhhhhh...ee....ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------GUANYLATE_KINASE_2  PDB: B:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -----------------------Exon 1.10d  PDB: - UniProt: 226-262  --------------------------Exon 1.12a  PDB: B:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: B:384-40Exon 1.14e  PDB: B:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) Exon 1.9c  PDB: B:279-28-----------------------------------Exon 1.11b  PDB: B:282-289  --------------------------Exon 1.12g  PDB: B:316-383 UniProt: 316-383                         --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney B 279 FQG----------------------------------------------------------------------------RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                              |      -         -         -         -         -         -         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                            281                                                                          282

Chain C from PDB  Type:PROTEIN  Length:180
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:256
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
           EM55_HUMAN   203 WQGRVEGSSKESAGLIPSPELQEWRVASMAQSAPSEAPSCSPFGKKKKYKDKYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3n                                                                            eyc_ C: automated matches                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----------------------------------------------------------------------------..eeeee.....hhhhhhhhhhhhh...ee....ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------GUANYLATE_KINASE_2  PDB: C:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -----------------------Exon 1.10d  PDB: - UniProt: 226-262  --------------------------Exon 1.12a  PDB: C:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: C:384-40Exon 1.14e  PDB: C:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) Exon 1.9c  PDB: C:279-28-----------------------------------Exon 1.11b  PDB: C:282-289  --------------------------Exon 1.12g  PDB: C:316-383 UniProt: 316-383                         --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney C 279 FQG----------------------------------------------------------------------------RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                              |      -         -         -         -         -         -         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                            281                                                                          282

Chain D from PDB  Type:PROTEIN  Length:180
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:256
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
           EM55_HUMAN   203 WQGRVEGSSKESAGLIPSPELQEWRVASMAQSAPSEAPSCSPFGKKKKYKDKYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3n                                                                            eyd_ D: automated matches                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----------------------------------------------------------------------------..eeeee.....hhhhhhhhhhhhh...ee....ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------GUANYLATE_KINASE_2  PDB: D:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -----------------------Exon 1.10d  PDB: - UniProt: 226-262  --------------------------Exon 1.12a  PDB: D:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: D:384-40Exon 1.14e  PDB: D:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) Exon 1.9c  PDB: D:279-28-----------------------------------Exon 1.11b  PDB: D:282-289  --------------------------Exon 1.12g  PDB: D:316-383 UniProt: 316-383                         --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney D 279 FQG----------------------------------------------------------------------------RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                              |      -         -         -         -         -         -         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                            281                                                                          282

Chain E from PDB  Type:PROTEIN  Length:180
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:256
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
           EM55_HUMAN   203 WQGRVEGSSKESAGLIPSPELQEWRVASMAQSAPSEAPSCSPFGKKKKYKDKYLAKHSSIFDQLDVVSYEEVVRLPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3n                                                                            eye_ E: automated matches                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...----------------------------------------------------------------------------..eeeee.....hhhhhhhhhhhhh...ee....ee..............ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------GUANYLATE_KINASE_2  PDB: E:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -----------------------Exon 1.10d  PDB: - UniProt: 226-262  --------------------------Exon 1.12a  PDB: E:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: E:384-40Exon 1.14e  PDB: E:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) Exon 1.9c  PDB: E:279-28-----------------------------------Exon 1.11b  PDB: E:282-289  --------------------------Exon 1.12g  PDB: E:316-383 UniProt: 316-383                         --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney E 279 FQG----------------------------------------------------------------------------RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                              |      -         -         -         -         -         -         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                            281                                                                          282

Chain F from PDB  Type:PROTEIN  Length:175
 aligned with EM55_HUMAN | Q00013 from UniProtKB/Swiss-Prot  Length:466

    Alignment length:178
                                   290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450        
           EM55_HUMAN   281 KRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
               SCOP domains d3neyf_ F: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Guanylate_kin-3neyF01 F:282-453                                                                                                                                             ----- Pfam domains (1)
           Pfam domains (2) -Guanylate_kin-3neyF02 F:282-453                                                                                                                                             ----- Pfam domains (2)
           Pfam domains (3) -Guanylate_kin-3neyF03 F:282-453                                                                                                                                             ----- Pfam domains (3)
           Pfam domains (4) -Guanylate_kin-3neyF04 F:282-453                                                                                                                                             ----- Pfam domains (4)
           Pfam domains (5) -Guanylate_kin-3neyF05 F:282-453                                                                                                                                             ----- Pfam domains (5)
           Pfam domains (6) -Guanylate_kin-3neyF06 F:282-453                                                                                                                                             ----- Pfam domains (6)
         Sec.struct. author ...eeeee.....hhhhhhhhhhhhh...ee....ee.....---......ee.hhhhhhhhhhh..eeeeeee..eeeeeehhhhhhhhhh..eeeee.hhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q---------- SAPs(SNPs)
                PROSITE (1) -GUANYLATE_KINASE_2  PDB: F:282-451 UniProt: 282-451                                                                                                                       ------- PROSITE (1)
                PROSITE (2) ------------------------------------GUANYLATE_KINASE_1---------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) --------Exon 1.12a  PDB: F:289-316  -------------------------------------------------------------------Exon 1.13b  PDB: F:384-40Exon 1.14e  PDB: F:409-458 UniProt: 409-466        Transcript 1 (1)
           Transcript 1 (2) 1.11b    --------------------------Exon 1.12g  PDB: F:316-383 (gaps) UniProt: 316-383                  --------------------------------------------------------------------------- Transcript 1 (2)
                 3ney F 281 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR---EDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 458
                                   290       300       310       320 |   | 330       340       350       360       370       380       390       400       410       420       430       440       450        
                                                                   322 326

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Human (Homo sapiens) [TaxId: 9606] (86)

1a	d3neya_	A:
1b	d3neyd_	D:
1c	d3neye_	E:
1d	d3neyf_	F:
1e	d3neyb_	B:
1f	d3neyc_	C:

(no "CATH Domain" information available for 3NEY)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: Guanylate_kin (23)

Homo sapiens (Human) (4)

1a	Guanylate_kin-3neyF01	F:282-453
1b	Guanylate_kin-3neyF02	F:282-453
1c	Guanylate_kin-3neyF03	F:282-453
1d	Guanylate_kin-3neyF04	F:282-453
1e	Guanylate_kin-3neyF05	F:282-453
1f	Guanylate_kin-3neyF06	F:282-453

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (EM55_HUMAN | Q00013)

molecular function
	GO:0004385	guanylate kinase activity	Catalysis of the reaction: ATP + GMP = ADP + GDP.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0046710	GDP metabolic process	The chemical reactions and pathways involving GDP, guanosine 5'-diphosphate.
	GO:0046037	GMP metabolic process	The chemical reactions and pathways involving GMP, guanosine monophosphate.
	GO:0090022	regulation of neutrophil chemotaxis	Any process that modulates the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0030863	cortical cytoskeleton	The portion of the cytoskeleton that lies just beneath the plasma membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0032420	stereocilium	An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNX	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ney)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3ney
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	EM55_HUMAN \| Q00013
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	EM55_HUMAN \| Q00013
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	EM55_HUMAN \| Q00013	:	2ejy 2ev8

(no "Related Entries Specified in the PDB File" available for 3NEY)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 43)

Sites (12, 12)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 6)

PROSITE Motifs (2, 12)

Exons (6, 35)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (0, 0)

Pfam Domains (1, 6)

Gene Ontology (12, 12)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File