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3NEY
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (33 KB)
Biol.Unit 5 (32 KB)
Biol.Unit 6 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF MPP1/P55
Authors
:
Y. Shen, Y. Tong, N. Zhong, X. Guan, W. Tempel, F. Mackenzie, C. H. Arrows A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structur Genomics Consortium (Sgc)
Date
:
09 Jun 10 (Deposition) - 04 Aug 10 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: F (1x)
Biol. Unit 6: E (1x)
Keywords
:
Structural Genomics Consortium, Sgc, 55 Kda Erythrocyte Membrane Protein, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shen, Y. Tong, N. Zhong, X. Guan, W. Tempel, F. Mackenzie, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Kinase Domain Of Mpp1/P55
To Be Published
[
close entry info
]
Hetero Components
(2, 43)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
2a: UNKNOWN ATOM OR ION (UNXa)
2aa: UNKNOWN ATOM OR ION (UNXaa)
2ab: UNKNOWN ATOM OR ION (UNXab)
2ac: UNKNOWN ATOM OR ION (UNXac)
2ad: UNKNOWN ATOM OR ION (UNXad)
2ae: UNKNOWN ATOM OR ION (UNXae)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
2r: UNKNOWN ATOM OR ION (UNXr)
2s: UNKNOWN ATOM OR ION (UNXs)
2t: UNKNOWN ATOM OR ION (UNXt)
2u: UNKNOWN ATOM OR ION (UNXu)
2v: UNKNOWN ATOM OR ION (UNXv)
2w: UNKNOWN ATOM OR ION (UNXw)
2x: UNKNOWN ATOM OR ION (UNXx)
2y: UNKNOWN ATOM OR ION (UNXy)
2z: UNKNOWN ATOM OR ION (UNXz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
2
UNX
31
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:48 , HOH A:175 , ALA A:290 , SER A:291 , GLY A:292 , VAL A:293 , GLY A:294 , ARG A:295 , SER A:296
BINDING SITE FOR RESIDUE SO4 A 3
02
AC2
SOFTWARE
ARG A:389 , HIS A:428
BINDING SITE FOR RESIDUE SO4 A 4
03
AC3
SOFTWARE
ARG B:389 , HIS B:428
BINDING SITE FOR RESIDUE SO4 B 5
04
AC4
SOFTWARE
ARG B:282 , ALA B:453 , CYS B:454
BINDING SITE FOR RESIDUE SO4 B 6
05
AC5
SOFTWARE
SER B:291 , GLY B:292 , VAL B:293 , GLY B:294 , ARG B:295 , SER B:296
BINDING SITE FOR RESIDUE SO4 B 7
06
AC6
SOFTWARE
HIS B:297 , ASN B:300
BINDING SITE FOR RESIDUE SO4 B 8
07
AC7
SOFTWARE
SER C:291 , GLY C:292 , VAL C:293 , GLY C:294 , ARG C:295 , SER C:296
BINDING SITE FOR RESIDUE SO4 C 1
08
AC8
SOFTWARE
ARG C:389 , HIS C:428
BINDING SITE FOR RESIDUE SO4 C 9
09
AC9
SOFTWARE
HOH D:14 , HOH D:25 , HOH D:163 , SER D:291 , GLY D:292 , VAL D:293 , GLY D:294 , ARG D:295 , SER D:296 , HOH D:461
BINDING SITE FOR RESIDUE SO4 D 2
10
BC1
SOFTWARE
ARG D:389 , HIS D:428
BINDING SITE FOR RESIDUE SO4 D 10
11
BC2
SOFTWARE
ARG F:389 , HIS F:428
BINDING SITE FOR RESIDUE SO4 F 11
12
BC3
SOFTWARE
ARG E:389 , HIS E:428
BINDING SITE FOR RESIDUE SO4 E 12
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011914 (E448Q, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011914
E
448
Q
EM55_HUMAN
Polymorphism
14092
A/B/C/D/E/F
E
448
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: GUANYLATE_KINASE_2 (A:282-451,B:282-451,C:282-451,D:28...)
2: GUANYLATE_KINASE_1 (A:317-334,B:317-334,C:317-334,D:31...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GUANYLATE_KINASE_2
PS50052
Guanylate kinase-like domain profile.
EM55_HUMAN
282-451
6
A:282-451
B:282-451
C:282-451
D:282-451
E:282-451
F:282-451
2
GUANYLATE_KINASE_1
PS00856
Guanylate kinase-like signature.
EM55_HUMAN
317-334
6
A:317-334
B:317-334
C:317-334
D:317-334
E:317-334
F:317-334
[
close PROSITE info
]
Exons
(6, 35)
Info
All Exons
Exon 1.9c (A:279-281 | B:279-281 | C:279-281 ...)
Exon 1.11b (A:282-289 | B:282-289 | C:282-289 ...)
Exon 1.12a (A:289-316 | B:289-316 | C:289-316 ...)
Exon 1.12g (A:316-383 | B:316-383 | C:316-383 ...)
Exon 1.13b (A:384-408 | B:384-408 | C:384-408 ...)
Exon 1.14e (A:409-458 | B:409-458 | C:409-458 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8b/1.9c
2: Boundary 1.9c/1.10d
3: Boundary 1.10d/1.11b
4: Boundary 1.11b/1.12a
5: Boundary 1.12a/1.12g
6: Boundary 1.12g/1.13b
7: Boundary 1.13b/1.14e
8: Boundary 1.14e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000369534
2b
ENSE00001842847
X:154033796-154033547
250
EM55_HUMAN
1-34
34
0
-
-
1.5c
ENST00000369534
5c
ENSE00001622979
X:154020560-154020417
144
EM55_HUMAN
35-82
48
0
-
-
1.6a
ENST00000369534
6a
ENSE00001697405
X:154020122-154020044
79
EM55_HUMAN
83-109
27
0
-
-
1.7b
ENST00000369534
7b
ENSE00001607029
X:154019343-154019258
86
EM55_HUMAN
109-137
29
0
-
-
1.8b
ENST00000369534
8b
ENSE00002179637
X:154018297-154018229
69
EM55_HUMAN
138-160
23
0
-
-
1.9c
ENST00000369534
9c
ENSE00001675460
X:154014675-154014479
197
EM55_HUMAN
161-226
66
5
A:279-281
B:279-281
C:279-281
D:279-281
E:279-281
-
3
3
3
3
3
-
1.10d
ENST00000369534
10d
ENSE00001691038
X:154013432-154013326
107
EM55_HUMAN
226-262
37
0
-
-
1.11b
ENST00000369534
11b
ENSE00001641741
X:154012383-154012303
81
EM55_HUMAN
262-289
28
6
A:282-289
B:282-289
C:282-289
D:282-289
E:282-289
F:281-289
8
8
8
8
8
9
1.12a
ENST00000369534
12a
ENSE00001684797
X:154011782-154011702
81
EM55_HUMAN
289-316
28
6
A:289-316
B:289-316
C:289-316
D:289-316
E:289-316
F:289-316
28
28
28
28
28
28
1.12g
ENST00000369534
12g
ENSE00001658958
X:154010077-154009875
203
EM55_HUMAN
316-383
68
6
A:316-383
B:316-383
C:316-383
D:316-383
E:316-383
F:316-383 (gaps)
68
68
68
68
68
68
1.13b
ENST00000369534
13b
ENSE00001612210
X:154009588-154009514
75
EM55_HUMAN
384-408
25
6
A:384-408
B:384-408
C:384-408
D:384-408
E:384-408
F:384-408
25
25
25
25
25
25
1.14e
ENST00000369534
14e
ENSE00001863406
X:154007628-154006959
670
EM55_HUMAN
409-466
58
6
A:409-458
B:409-458
C:409-458
D:409-458
E:409-458
F:409-458
50
50
50
50
50
50
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3neya_ (A:)
1b: SCOP_d3neyd_ (D:)
1c: SCOP_d3neye_ (E:)
1d: SCOP_d3neyf_ (F:)
1e: SCOP_d3neyb_ (B:)
1f: SCOP_d3neyc_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d3neya_
A:
1b
d3neyd_
D:
1c
d3neye_
E:
1d
d3neyf_
F:
1e
d3neyb_
B:
1f
d3neyc_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Guanylate_kin_3neyF01 (F:282-453)
1b: PFAM_Guanylate_kin_3neyF02 (F:282-453)
1c: PFAM_Guanylate_kin_3neyF03 (F:282-453)
1d: PFAM_Guanylate_kin_3neyF04 (F:282-453)
1e: PFAM_Guanylate_kin_3neyF05 (F:282-453)
1f: PFAM_Guanylate_kin_3neyF06 (F:282-453)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Guanylate_kin
(23)
Homo sapiens (Human)
(4)
1a
Guanylate_kin-3neyF01
F:282-453
1b
Guanylate_kin-3neyF02
F:282-453
1c
Guanylate_kin-3neyF03
F:282-453
1d
Guanylate_kin-3neyF04
F:282-453
1e
Guanylate_kin-3neyF05
F:282-453
1f
Guanylate_kin-3neyF06
F:282-453
[
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Asym.Unit (182 KB)
Header - Asym.Unit
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