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(-) Description

Title :  XENA - OXIDIZED - Y183F VARIANT
 
Authors :  T. Werther, H. Dobbek
Date :  21 Jul 14  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Werther, H. Dobbek
Authentic Michaelis-Complexes Provide Evidence For Redox-Dpendent Substrate Binding And Ground-State Stabilization In Flavoenzymes
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - XENOBIOTIC REDUCTASE
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA 86
    Organism Taxid: 303
    Synonym: XENOBIOTIC REDUCTASE A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:22 , PRO A:23 , MET A:24 , CYS A:25 , ALA A:57 , GLN A:99 , HIS A:178 , HIS A:181 , ARG A:231 , ALA A:301 , TRP A:302 , GLY A:303 , GLY A:325 , ARG A:326 , TRP A:358 , HOH A:2354 , HOH A:2355 , HOH A:2371BINDING SITE FOR RESIDUE FMN A1361
2AC2SOFTWARELYS A:346 , ALA A:347 , SER A:348 , HOH A:2378 , HOH A:2383 , HOH A:2395BINDING SITE FOR RESIDUE SO4 A1362
3AC3SOFTWAREARG A:111 , ARG A:125 , HOH A:2203BINDING SITE FOR RESIDUE SO4 A1363

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UTH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UTH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UTH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UTH)

(-) Exons   (0, 0)

(no "Exon" information available for 4UTH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee...eee.............hhhhhhhhhhhhhh...eeeeeeee.hhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh...hhhhh..............ee..............ee.hhhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhh..eee.....hhhhhhhhhhh....eee.hhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uth A   2 SALFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGFLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGVEKASWTLPAPYAHWLE 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 3N16: 1,1)

(no "SCOP Domain" information available for 4UTH, only for superseded entry 3N16 replaced by 4UTH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UTH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UTH)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Q3ZDM6_PSEPU | Q3ZDM6
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  1.6.99.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3ZDM6_PSEPU | Q3ZDM6: 3l5l 3l5m 3l65 3l66 3l67 3l68 3n14 3n19 4uti 4utj 4utk 4utl 4utm

(-) Related Entries Specified in the PDB File

4uti XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH COUMARIN
4utj XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH 8- HYDROXYCOUMARIN
4utk XENA - REDUCED - Y183F VARIANT
4utl XENA - REDUCED - Y183F VARIANT IN COMPLEX WITH COUMARIN
4utm XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH 8- HYDROXYCOUMARIN