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(-) Description

Title :  XENA - REDUCED - Y183F VARIANT IN COMPLEX WITH 8-HYDROXYCOUMARIN
 
Authors :  T. Werther, H. Dobbek
Date :  21 Jul 14  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.09
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Werther, H. Dobbek
Authentic Michaelis-Complexes Provide Evidence For Redox-Dependent Substrate Binding And Ground-State Destabilization In Flavoenzymes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - XENOBIOTIC REDUCTASE
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Strain: 86
    Synonym: XENOBIOTIC REDUCTASE A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
18CM1Ligand/Ion8-HYDROXYCOUMARIN
2FNR1Ligand/Ion1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
18CM2Ligand/Ion8-HYDROXYCOUMARIN
2FNR2Ligand/Ion1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL
3SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:22 , PRO A:23 , MET A:24 , CYS A:25 , ALA A:57 , GLN A:99 , HIS A:178 , HIS A:181 , ARG A:231 , ALA A:301 , TRP A:302 , GLY A:303 , GLY A:325 , ARG A:326 , TRP A:358 , 8CM A:1363 , HOH A:2352 , HOH A:2353 , HOH A:2368BINDING SITE FOR RESIDUE FNR A1362
2AC2SOFTWARETYR A:27 , ILE A:66 , HIS A:178 , HIS A:181 , PHE A:183 , TRP A:358 , FNR A:1362BINDING SITE FOR RESIDUE 8CM A1363
3AC3SOFTWAREARG A:111 , ARG A:125 , HOH A:2391 , HOH A:2393BINDING SITE FOR RESIDUE SO4 A1364
4AC4SOFTWAREASP A:205 , ARG A:209 , ARG A:254 , HOH A:2275 , HOH A:2276BINDING SITE FOR RESIDUE SO4 A1365

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UTM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UTM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UTM)

(-) Exons   (0, 0)

(no "Exon" information available for 4UTM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.eee..eee...eee.............hhhhhhhhhhhhhh...eeeeeeee.hhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh...hhhhh..............ee..............ee.hhhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhh..eee.....hhhhhhhhhhh....eee.hhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4utm A   2 SALFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGFLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGVEKASWTLPAPYAHWLER 361
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UTM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UTM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UTM)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3ZDM6_PSEPU | Q3ZDM6: 3l5l 3l5m 3l65 3l66 3l67 3l68 3n14 3n19 4uth 4uti 4utj 4utk 4utl

(-) Related Entries Specified in the PDB File

4uth XENA - OXIDIZED - Y183F VARIANT
4uti XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH COUMARIN
4utj XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH 8- HYDROXYCOUMARIN
4utk XENA - REDUCED - Y183F VARIANT
4utl XENA - REDUCED - Y183F VARIANT IN COMPLEX WITH COUMARIN