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(-) Description

Title :  XENA - REDUCED - Y183F VARIANT IN COMPLEX WITH COUMARIN
 
Authors :  T. Werther, H. Dobbek
Date :  21 Jul 14  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Werther, H. Dobbek
Authentic Michaelis-Complexes Provide Evidence For Redox-Dpendent Substrate Binding And Ground-State Stabilization In Flavoenzymes
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - XENOBIOTIC REDUCTASE
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Strain: 86
    Synonym: XENOBIOTIC REDUCTASE A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1COU4Ligand/IonCOUMARIN
2FNR1Ligand/Ion1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1COU8Ligand/IonCOUMARIN
2FNR2Ligand/Ion1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL
3SO46Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:22 , PRO A:23 , MET A:24 , CYS A:25 , ALA A:57 , GLN A:99 , HIS A:178 , HIS A:181 , ARG A:231 , ALA A:301 , TRP A:302 , GLY A:303 , VAL A:324 , GLY A:325 , ARG A:326 , TRP A:358 , COU A:1362 , HOH A:2288 , HOH A:2289 , HOH A:2303BINDING SITE FOR RESIDUE FNR A1361
2AC2SOFTWARETYR A:27 , ILE A:66 , HIS A:178 , HIS A:181 , PHE A:183 , TRP A:358 , FNR A:1361 , COU A:1364BINDING SITE FOR RESIDUE COU A1362
3AC3SOFTWARETRP A:278 , TRP A:302 , ARG A:326 , HOH A:2275BINDING SITE FOR RESIDUE COU A1363
4AC4SOFTWAREPHE A:183 , PHE A:269 , COU A:1362 , HOH A:2323BINDING SITE FOR RESIDUE COU A1364
5AC5SOFTWAREMET A:28 , TRP A:37 , ARG A:47 , ALA A:91 , ALA A:92 , HOH A:2042BINDING SITE FOR RESIDUE COU A1365
6AC6SOFTWAREARG A:111 , ARG A:125BINDING SITE FOR RESIDUE SO4 A1366
7AC7SOFTWARELYS A:346 , ALA A:347 , SER A:348 , HOH A:2310 , HOH A:2316BINDING SITE FOR RESIDUE SO4 A1367
8AC8SOFTWAREASP A:205 , ARG A:209 , ARG A:254 , HOH A:2218BINDING SITE FOR RESIDUE SO4 A1368

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UTL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UTL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UTL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UTL)

(-) Exons   (0, 0)

(no "Exon" information available for 4UTL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eee..eee...eee.............hhhhhhhhhhhhhh...eeeeeeee.hhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhh...hhhhh..............ee..............ee.hhhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh............hhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhh..eee.....hhhhhhhhhhh....eee.hhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4utl A   2 SALFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPEGRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGFLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGVEKASWTLPAPYAHWLE 360
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UTL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UTL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UTL)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3ZDM6_PSEPU | Q3ZDM6: 3l5l 3l5m 3l65 3l66 3l67 3l68 3n14 3n19 4uth 4uti 4utj 4utk 4utm

(-) Related Entries Specified in the PDB File

4uth XENA - OXIDIZED - Y183F VARIANT
4uti XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH COUMARIN
4utj XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH 8- HYDROXYCOUMARIN
4utk XENA - REDUCED - Y183F VARIANT
4utm XENA - OXIDIZED - Y183F VARIANT IN COMPLEX WITH 8- HYDROXYCOUMARIN