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3MUU
Biol. Unit 1
Info
Asym.Unit (629 KB)
Biol.Unit 1 (308 KB)
Biol.Unit 2 (307 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SINDBIS VIRUS E2-E1 HETERODIMER AT LOW PH
Authors
:
L. Li, J. Jose, Y. Xiang, R. J. Kuhn, M. G. Rossmann
Date
:
03 May 10 (Deposition) - 24 Nov 10 (Release) - 12 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.29
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Beta Barrels, Ig-Like Folds, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Li, J. Jose, Y. Xiang, R. J. Kuhn, M. G. Rossmann
Structural Changes Of Envelope Proteins During Alphavirus Fusion.
Nature V. 468 705 2010
[
close entry info
]
Hetero Components
(4, 55)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
3
MSE
30
Mod. Amino Acid
SELENOMETHIONINE
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:282 , SER A:284 , ASN A:318 , NAG A:752
BINDING SITE FOR RESIDUE NAG A 751
02
AC2
SOFTWARE
NAG A:751 , BMA A:753
BINDING SITE FOR RESIDUE NAG A 752
03
AC3
SOFTWARE
NAG A:752 , MAN A:754
BINDING SITE FOR RESIDUE BMA A 753
04
AC4
SOFTWARE
BMA A:753 , THR C:7 , LEU C:8 , THR C:9 , SER C:10 , GLN C:55 , SER C:56 , ARG C:65
BINDING SITE FOR RESIDUE MAN A 754
05
AC5
SOFTWARE
ASN A:605 , NAG A:762
BINDING SITE FOR RESIDUE NAG A 761
06
AC6
SOFTWARE
NAG A:761 , BMA A:763
BINDING SITE FOR RESIDUE NAG A 762
07
AC7
SOFTWARE
NAG A:762 , MAN A:764 , MAN A:765
BINDING SITE FOR RESIDUE BMA A 763
08
AC8
SOFTWARE
BMA A:763 , BMA C:763 , MAN C:764
BINDING SITE FOR RESIDUE MAN A 764
09
AC9
SOFTWARE
BMA A:763
BINDING SITE FOR RESIDUE MAN A 765
10
BC1
SOFTWARE
HIS B:282 , ASN B:318 , NAG B:752
BINDING SITE FOR RESIDUE NAG B 751
11
BC2
SOFTWARE
LYS A:556 , NAG B:751 , BMA B:753 , MAN B:754
BINDING SITE FOR RESIDUE NAG B 752
12
BC3
SOFTWARE
NAG B:752 , MAN B:754
BINDING SITE FOR RESIDUE BMA B 753
13
BC4
SOFTWARE
THR A:7 , SER A:56 , GLY A:57 , ARG A:65 , NAG B:752 , BMA B:753
BINDING SITE FOR RESIDUE MAN B 754
14
BC5
SOFTWARE
LYS B:131 , ASN B:605 , NAG B:762
BINDING SITE FOR RESIDUE NAG B 761
15
BC6
SOFTWARE
NAG B:761 , BMA B:763 , MAN B:764
BINDING SITE FOR RESIDUE NAG B 762
16
BC7
SOFTWARE
NAG B:762 , MAN B:764
BINDING SITE FOR RESIDUE BMA B 763
17
BC8
SOFTWARE
NAG B:762 , BMA B:763
BINDING SITE FOR RESIDUE MAN B 764
18
BC9
SOFTWARE
HIS C:282 , ASN C:318 , NAG C:752
BINDING SITE FOR RESIDUE NAG C 751
19
CC1
SOFTWARE
NAG C:751 , BMA C:753
BINDING SITE FOR RESIDUE NAG C 752
20
CC2
SOFTWARE
NAG C:752 , MAN C:754
BINDING SITE FOR RESIDUE BMA C 753
21
CC3
SOFTWARE
THR B:7 , SER B:10 , SER B:56 , GLY B:57 , ARG B:65 , BMA C:753
BINDING SITE FOR RESIDUE MAN C 754
22
CC4
SOFTWARE
LYS C:131 , ASN C:605 , NAG C:762
BINDING SITE FOR RESIDUE NAG C 761
23
CC5
SOFTWARE
NAG C:761 , BMA C:763
BINDING SITE FOR RESIDUE NAG C 762
24
CC6
SOFTWARE
MAN A:764 , NAG C:762 , MAN C:764
BINDING SITE FOR RESIDUE BMA C 763
25
CC7
SOFTWARE
MAN A:764 , BMA C:763
BINDING SITE FOR RESIDUE MAN C 764
[
close Site info
]
SAPs(SNPs)/Variants
(5, 13)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLS_SINDV_001 (D5G, chain C, )
2: VAR_POLS_SINDV_002 (V23E, chain A/B/C, )
3: VAR_POLS_SINDV_003 (K70E, chain A/B/C, )
4: VAR_POLS_SINDV_004 (S114R, chain A/B/C, )
5: VAR_POLS_SINDV_007 (D473V, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLS_SINDV_001
*
D
333
G
POLS_SINDV
---
---
C
D
5
G
2
UniProt
VAR_POLS_SINDV_002
*
V
351
E
POLS_SINDV
---
---
A/B/C
V
23
E
3
UniProt
VAR_POLS_SINDV_003
*
K
398
E
POLS_SINDV
---
---
A/B/C
K
70
E
4
UniProt
VAR_POLS_SINDV_004
*
S
442
R
POLS_SINDV
---
---
A/B/C
S
114
R
5
UniProt
VAR_POLS_SINDV_007
*
D
919
V
POLS_SINDV
---
---
A/B/C
D
473
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Alpha_E1_glycop_3muuF01 (F:361-740)
1b: PFAM_Alpha_E1_glycop_3muuF02 (F:361-740)
1c: PFAM_Alpha_E1_glycop_3muuF03 (F:361-740)
1d: PFAM_Alpha_E1_glycop_3muuF04 (F:361-740)
1e: PFAM_Alpha_E1_glycop_3muuF05 (F:361-740)
1f: PFAM_Alpha_E1_glycop_3muuF06 (F:361-740)
2a: PFAM_Alpha_E2_glycop_3muuF07 (F:11-341)
2b: PFAM_Alpha_E2_glycop_3muuF08 (F:11-341)
2c: PFAM_Alpha_E2_glycop_3muuF09 (F:11-341)
2d: PFAM_Alpha_E2_glycop_3muuF10 (F:11-341)
2e: PFAM_Alpha_E2_glycop_3muuF11 (F:11-341)
2f: PFAM_Alpha_E2_glycop_3muuF12 (F:11-341)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Alpha_E1_glycop]
(11)
Family
:
Alpha_E1_glycop
(11)
Sindbis virus (SINV)
(3)
1a
Alpha_E1_glycop-3muuF01
F:361-740
1b
Alpha_E1_glycop-3muuF02
F:361-740
1c
Alpha_E1_glycop-3muuF03
F:361-740
1d
Alpha_E1_glycop-3muuF04
F:361-740
1e
Alpha_E1_glycop-3muuF05
F:361-740
1f
Alpha_E1_glycop-3muuF06
F:361-740
Clan
:
no clan defined [family: Alpha_E2_glycop]
(9)
Family
:
Alpha_E2_glycop
(9)
Sindbis virus (SINV)
(2)
2a
Alpha_E2_glycop-3muuF07
F:11-341
2b
Alpha_E2_glycop-3muuF08
F:11-341
2c
Alpha_E2_glycop-3muuF09
F:11-341
2d
Alpha_E2_glycop-3muuF10
F:11-341
2e
Alpha_E2_glycop-3muuF11
F:11-341
2f
Alpha_E2_glycop-3muuF12
F:11-341
[
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]
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