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(-) Description

Title :  CRYSTAL STRUCTURE OF CALCINEURIN IN COMPLEX WITH AKAP79 PEPTIDE
 
Authors :  H. Li, P. G. Hogan
Date :  28 Jan 10  (Deposition) - 12 Jan 11  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D,E  (1x)
Keywords :  Protein-Peptide Docking, Protein Targeting, Calcineurin, Akap79, Beta-Augmentation, Calmodulin-Binding, Membrane, Hydrolase, Iron, Metal-Binding, Nucleus, Phosphoprotein, Protein Phosphatase, Lipoprotein, Myristate, Hydrolase-Calcium Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Li, M. D. Pink, J. G. Murphy, A. Stein, M. L. Dell'Acqua, P. G. Hogan
Balanced Interactions Of Calcineurin With Akap79 Regulate Ca(2+)-Calcineurin-Nfat Signaling.
Nat. Struct. Mol. Biol. V. 19 337 2012
PubMed-ID: 22343722  |  Reference-DOI: 10.1038/NSMB.2238
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AKAP79 PEPTIDE
    ChainsE
    EngineeredYES
    FragmentUNP RESIDUES 336-346
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES
 
Molecule 2 - SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT ALPHA ISOFORM
    ChainsA, C
    EC Number3.1.3.16
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 14-370
    GenePPP3CA, CALNA, CNA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT ALPHA ISOFORM, CAM-PRP CATALYTIC SUBUNIT
 
Molecule 3 - CALCINEURIN SUBUNIT B TYPE 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 16-170
    GenePPP3R1, CNA2, CNB
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTEIN PHOSPHATASE 2B REGULATORY SUBUNIT 1, PROTEIN PHOSPHATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM 1

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit ABCDE
Biological Unit 1 (1x)AB  E
Biological Unit 2 (1x)  CD 
Biological Unit 3 (1x)ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric Unit (4, 14)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2FE2Ligand/IonFE (III) ION
3PO42Ligand/IonPHOSPHATE ION
4ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FE-1Ligand/IonFE (III) ION
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FE-1Ligand/IonFE (III) ION
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FE-1Ligand/IonFE (III) ION
3PO42Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:92 , ASP A:118 , ARG A:122 , ASN A:150 , HIS A:151 , ARG A:254 , HIS A:281 , ZN A:505 , FE A:506 , HOH A:520 , HOH A:525BINDING SITE FOR RESIDUE PO4 A 500
02AC2SOFTWAREASP A:118 , ASN A:150 , HIS A:199 , HIS A:281 , PO4 A:500 , FE A:506BINDING SITE FOR RESIDUE ZN A 505
03AC3SOFTWAREASP A:90 , HIS A:92 , ASP A:118 , PO4 A:500 , ZN A:505 , HOH A:525BINDING SITE FOR RESIDUE FE A 506
04AC4SOFTWAREASP B:30 , ASP B:32 , SER B:34 , SER B:36 , GLU B:41 , HOH B:421BINDING SITE FOR RESIDUE CA B 501
05AC5SOFTWAREASP B:62 , ASP B:64 , ASN B:66 , GLU B:68 , GLU B:73 , HOH B:422BINDING SITE FOR RESIDUE CA B 502
06AC6SOFTWAREASP B:99 , ASP B:101 , ASP B:103 , TYR B:105 , GLU B:110 , HOH B:423BINDING SITE FOR RESIDUE CA B 503
07AC7SOFTWAREASP B:140 , ASP B:142 , ASP B:144 , ARG B:146 , GLU B:151 , HOH B:424BINDING SITE FOR RESIDUE CA B 504
08AC8SOFTWAREHIS C:92 , ASP C:118 , ARG C:122 , ASN C:150 , HIS C:151 , ARG C:254 , HIS C:281 , ZN C:512 , FE C:513 , HOH C:601BINDING SITE FOR RESIDUE PO4 C 507
09AC9SOFTWAREASP C:118 , ASN C:150 , HIS C:199 , HIS C:281 , PO4 C:507 , FE C:513BINDING SITE FOR RESIDUE ZN C 512
10BC1SOFTWAREASP C:90 , HIS C:92 , ASP C:118 , PO4 C:507 , ZN C:512 , HOH C:601BINDING SITE FOR RESIDUE FE C 513
11BC2SOFTWAREASP D:30 , ASP D:32 , SER D:34 , SER D:36 , GLU D:41 , HOH D:415BINDING SITE FOR RESIDUE CA D 508
12BC3SOFTWAREASP D:62 , ASP D:64 , ASN D:66 , GLU D:68 , GLU D:73 , HOH D:412BINDING SITE FOR RESIDUE CA D 509
13BC4SOFTWAREASP D:99 , ASP D:101 , ASP D:103 , TYR D:105 , GLU D:110 , HOH D:413BINDING SITE FOR RESIDUE CA D 510
14BC5SOFTWAREASP D:140 , ASP D:142 , ASP D:144 , ARG D:146 , GLU D:151 , HOH D:414BINDING SITE FOR RESIDUE CA D 511

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LL8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:83 -Pro A:84
2Ala C:83 -Pro C:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LL8)

(-) PROSITE Motifs  (3, 18)

Asymmetric Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_1PS00018 EF-hand calcium-binding domain.CANB1_HUMAN31-43
 
63-75
 
100-112
 
141-153
 
  8B:30-42
D:30-42
B:62-74
D:62-74
B:99-111
D:99-111
B:140-152
D:140-152
2EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CANB1_HUMAN50-85
 
18-46
 
87-122
 
128-163
 
  8B:49-84
D:49-84
B:17-45
D:17-45
B:86-121
D:86-121
B:127-162
D:127-162
3SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP2BA_HUMAN147-152
 
  2A:147-152
C:147-152
Biological Unit 1 (3, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_1PS00018 EF-hand calcium-binding domain.CANB1_HUMAN31-43
 
63-75
 
100-112
 
141-153
 
  4B:30-42
-
B:62-74
-
B:99-111
-
B:140-152
-
2EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CANB1_HUMAN50-85
 
18-46
 
87-122
 
128-163
 
  4B:49-84
-
B:17-45
-
B:86-121
-
B:127-162
-
3SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP2BA_HUMAN147-152
 
  1A:147-152
-
Biological Unit 2 (3, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_1PS00018 EF-hand calcium-binding domain.CANB1_HUMAN31-43
 
63-75
 
100-112
 
141-153
 
  4-
D:30-42
-
D:62-74
-
D:99-111
-
D:140-152
2EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CANB1_HUMAN50-85
 
18-46
 
87-122
 
128-163
 
  4-
D:49-84
-
D:17-45
-
D:86-121
-
D:127-162
3SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP2BA_HUMAN147-152
 
  1-
C:147-152
Biological Unit 3 (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_1PS00018 EF-hand calcium-binding domain.CANB1_HUMAN31-43
 
63-75
 
100-112
 
141-153
 
  8B:30-42
D:30-42
B:62-74
D:62-74
B:99-111
D:99-111
B:140-152
D:140-152
2EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CANB1_HUMAN50-85
 
18-46
 
87-122
 
128-163
 
  8B:49-84
D:49-84
B:17-45
D:17-45
B:86-121
D:86-121
B:127-162
D:127-162
3SER_THR_PHOSPHATASEPS00125 Serine/threonine specific protein phosphatases signature.PP2BA_HUMAN147-152
 
  2A:147-152
C:147-152

(-) Exons   (14, 28)

Asymmetric Unit (14, 28)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4ENST000002343104ENSE00001191356chr2:68479663-68479257407CANB1_HUMAN1-110--
1.6ENST000002343106ENSE00001806348chr2:68444263-6844422440CANB1_HUMAN2-15140--
1.7ENST000002343107ENSE00001434958chr2:68415822-68415646177CANB1_HUMAN15-74602B:15-73
D:15-73
59
59
1.8ENST000002343108ENSE00000758788chr2:68414446-6841438760CANB1_HUMAN74-94212B:73-93
D:73-93
21
21
1.9ENST000002343109ENSE00000810241chr2:68413784-68413600185CANB1_HUMAN94-155622B:93-154
D:93-154
62
62
1.10cENST0000023431010cENSE00001191364chr2:68408142-684059892154CANB1_HUMAN156-170152B:155-169
D:155-169
15
15

2.1ENST000003947181ENSE00001631134chr14:64932217-64932331115AKAP5_HUMAN-00--
2.2bENST000003947182bENSE00001519350chr14:64934850-64935705856AKAP5_HUMAN1-2852850--

3.2bENST000003948542bENSE00001896251chr4:102268637-102267896742PP2BA_HUMAN1-20202A:14-20
C:14-20
7
7
3.3aENST000003948543aENSE00000934976chr4:102117273-102117073201PP2BA_HUMAN20-87682A:20-87
C:20-87
68
68
3.6ENST000003948546ENSE00000970132chr4:102030235-102030111125PP2BA_HUMAN87-128422A:87-128
C:87-128
42
42
3.8ENST000003948548ENSE00001628359chr4:102020879-102020768112PP2BA_HUMAN129-166382A:129-166
C:129-166
38
38
3.9cENST000003948549cENSE00000970134chr4:102019669-102019524146PP2BA_HUMAN166-214492A:166-214
C:166-214
49
49
3.10bENST0000039485410bENSE00001080696chr4:102015072-102014933140PP2BA_HUMAN215-261472A:215-261
C:215-261
47
47
3.11bENST0000039485411bENSE00001720711chr4:102004420-10200434378PP2BA_HUMAN261-287272A:261-287
C:261-287
27
27
3.12ENST0000039485412ENSE00000970136chr4:102001783-10200168995PP2BA_HUMAN287-319332A:287-319
C:287-319
33
33
3.13ENST0000039485413ENSE00001781830chr4:101984514-101984389126PP2BA_HUMAN319-361432A:319-361
C:319-361
43
43
3.14ENST0000039485414ENSE00001080697chr4:101982318-10198224475PP2BA_HUMAN361-386262A:361-370
C:361-370
10
10
3.15ENST0000039485415ENSE00001080695chr4:101961723-10196163985PP2BA_HUMAN386-414290--
3.16ENST0000039485416ENSE00000934972chr4:101953521-10195342498PP2BA_HUMAN414-447340--
3.17ENST0000039485417ENSE00001797567chr4:101950352-10195032330PP2BA_HUMAN447-457110--
3.18eENST0000039485418eENSE00001284009chr4:101947218-1019445872632PP2BA_HUMAN457-521650--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:357
 aligned with PP2BA_HUMAN | Q08209 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:357
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       
          PP2BA_HUMAN    14 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLN 370
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee...eeee.....hhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...eee..........hhhhhhh..........hhhhhhhhhee............eee.......eeehhhhhhhhhhhh...eeee........eee...........eeee....hhhhh....eeeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------SER_TH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
           Transcript 3 (1) 3.2b   ------------------------------------------------------------------Exon 3.6  PDB: A:87-128 UniProt: 87-128   Exon 3.8  PDB: A:129-166              ------------------------------------------------Exon 3.10b  PDB: A:215-261 UniProt: 215-261    -------------------------Exon 3.12  PDB: A:287-319        -----------------------------------------Exon 3.14  Transcript 3 (1)
           Transcript 3 (2) ------Exon 3.3a  PDB: A:20-87 UniProt: 20-87                              ------------------------------------------------------------------------------Exon 3.9c  PDB: A:166-214 UniProt: 166-214       ----------------------------------------------Exon 3.11b  PDB: A:261-287 -------------------------------Exon 3.13  PDB: A:319-361 UniProt: 319-361 --------- Transcript 3 (2)
                 3ll8 A  14 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLN 370
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       

Chain B from PDB  Type:PROTEIN  Length:155
 aligned with CANB1_HUMAN | P63098 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:155
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165     
          CANB1_HUMAN    16 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 170
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......hhhhhh.hhhhh...hhhhhhhhhh.......hhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------EF_HAND_1    -------------------EF_HAND_1    ------------------------EF_HAND_1    ----------------------------EF_HAND_1    ----------------- PROSITE (1)
                PROSITE (2) --EF_HAND_2  PDB: B:17-45      ---EF_HAND_2  PDB: B:49-84             -EF_HAND_2  PDB: B:86-121            -----EF_HAND_2  PDB: B:127-162           ------- PROSITE (2)
           Transcript 1 (1) Exon 1.7  PDB: B:15-73 UniProt: 15-74 [INCOMPLETE]         -------------------Exon 1.9  PDB: B:93-154 UniProt: 94-155                       Exon 1.10c      Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.8  PDB: B:73-9---------------------------------------------------------------------------- Transcript 1 (2)
                 3ll8 B  15 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 169
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164     

Chain C from PDB  Type:PROTEIN  Length:357
 aligned with PP2BA_HUMAN | Q08209 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:357
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       
          PP2BA_HUMAN    14 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLN 370
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------Metallophos-3ll8C01 C:83-285                                                                                                                                                                               ------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------Metallophos-3ll8C02 C:83-285                                                                                                                                                                               ------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ................hhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeee...eeee.....hhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..........hhhhhh..........hhhhhhhhhee............eee.......eeehhhhhhhhhhhhh..eeee........eee...........eeee....hhhhh....eeeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------SER_TH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
           Transcript 3 (1) 3.2b   ------------------------------------------------------------------Exon 3.6  PDB: C:87-128 UniProt: 87-128   Exon 3.8  PDB: C:129-166              ------------------------------------------------Exon 3.10b  PDB: C:215-261 UniProt: 215-261    -------------------------Exon 3.12  PDB: C:287-319        -----------------------------------------Exon 3.14  Transcript 3 (1)
           Transcript 3 (2) ------Exon 3.3a  PDB: C:20-87 UniProt: 20-87                              ------------------------------------------------------------------------------Exon 3.9c  PDB: C:166-214 UniProt: 166-214       ----------------------------------------------Exon 3.11b  PDB: C:261-287 -------------------------------Exon 3.13  PDB: C:319-361 UniProt: 319-361 --------- Transcript 3 (2)
                 3ll8 C  14 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLN 370
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       

Chain D from PDB  Type:PROTEIN  Length:155
 aligned with CANB1_HUMAN | P63098 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:155
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165     
          CANB1_HUMAN    16 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 170
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------EF_hand_3-3ll8D01 D:22-46-------------------------------------------EF_hand_5-3ll8D03 D:90-156                                         ------------- Pfam domains (1)
           Pfam domains (2) -------EF_hand_3-3ll8D02 D:22-46-------------------------------------------EF_hand_5-3ll8D04 D:90-156                                         ------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------EF_hand_5-3ll8D05 D:90-156                                         ------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------EF_hand_5-3ll8D06 D:90-156                                         ------------- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------efhand-3ll8D07 D:90-118      --------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------efhand-3ll8D08 D:90-118      --------------------------------------------------- Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhh.....eehhhhhh.hhhhhh..hhhhhhhhhh......eehhhhhhhhhh.....hhhhhhhhhhhhhh.....eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------EF_HAND_1    -------------------EF_HAND_1    ------------------------EF_HAND_1    ----------------------------EF_HAND_1    ----------------- PROSITE (1)
                PROSITE (2) --EF_HAND_2  PDB: D:17-45      ---EF_HAND_2  PDB: D:49-84             -EF_HAND_2  PDB: D:86-121            -----EF_HAND_2  PDB: D:127-162           ------- PROSITE (2)
           Transcript 1 (1) Exon 1.7  PDB: D:15-73 UniProt: 15-74 [INCOMPLETE]         -------------------Exon 1.9  PDB: D:93-154 UniProt: 94-155                       Exon 1.10c      Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------Exon 1.8  PDB: D:73-9---------------------------------------------------------------------------- Transcript 1 (2)
                 3ll8 D  15 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 169
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164     

Chain E from PDB  Type:PROTEIN  Length:11
 aligned with AKAP5_HUMAN | P24588 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:11
                                   345 
          AKAP5_HUMAN   336 EPIAIIITDTE 346
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 3ll8 E   4 EPIAIIITDTE  14
                                    13 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LL8)

(-) Pfam Domains  (4, 10)

Asymmetric Unit
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (96, 123)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (PP2BA_HUMAN | Q08209)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004723    calcium-dependent protein serine/threonine phosphatase activity    Catalysis of the reactions: protein serine phosphate + H2O = protein serine + phosphate; and protein threonine phosphate + H2O = protein threonine + phosphate. These reactions require the presence of calcium ions.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0033192    calmodulin-dependent protein phosphatase activity    Catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate, dependent on the presence of calcium-bound calmodulin.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0004722    protein serine/threonine phosphatase activity    Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
biological process
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0000082    G1/S transition of mitotic cell cycle    The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.
    GO:0042110    T cell activation    The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0007223    Wnt signaling pathway, calcium modulating pathway    The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC).
    GO:0033173    calcineurin-NFAT signaling cascade    Any intracellular signal transduction in which the signal is passed on within the cell by activation of a member of the NFAT protein family as a consequence of NFAT dephosphorylation by Ca(2+)-activated calcineurin. The cascade begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin dephosphorylates multiple phosphoserine residues on NFAT, resulting in the translocation of NFAT to the nucleus. The cascade ends with regulation of transcription by NFAT. The calcineurin-NFAT cascade lies downstream of many cell surface receptors, including G-protein coupled receptors (GPCRs) and receptor tyrosine kinases (RTKs) that signal to mobilize calcium ions (Ca2+).
    GO:0006816    calcium ion transport    The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0019722    calcium-mediated signaling    Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions.
    GO:0014898    cardiac muscle hypertrophy in response to stress    The physiological enlargement or overgrowth of all or part of the heart muscle due to an increase in size (not length) of individual cardiac muscle fibers, without cell division, as a result of a disturbance in organismal or cellular homeostasis.
    GO:0035690    cellular response to drug    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0071333    cellular response to glucose stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0060079    excitatory postsynaptic potential    A process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential.
    GO:0050804    modulation of chemical synaptic transmission    Any process that modulates the frequency or amplitude of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. Amplitude, in this case, refers to the change in postsynaptic membrane potential due to a single instance of synaptic transmission.
    GO:0033555    multicellular organismal response to stress    Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0035562    negative regulation of chromatin binding    Any process that stops or reduces the frequency, rate or extent of chromatin binding. Chromatin binding is the selective interaction with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
    GO:0050774    negative regulation of dendrite morphogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of dendrite morphogenesis.
    GO:0046676    negative regulation of insulin secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of insulin.
    GO:0051533    positive regulation of NFAT protein import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus.
    GO:1903244    positive regulation of cardiac muscle hypertrophy in response to stress    Any process that activates or increases the frequency, rate or extent of cardiac muscle hypertrophy in response to stress.
    GO:0051091    positive regulation of sequence-specific DNA binding transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0001975    response to amphetamine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine.
    GO:0051592    response to calcium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0048741    skeletal muscle fiber development    The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
    GO:0014883    transition between fast and slow fiber    The process of conversion of fast-contracting muscle fibers to a slower character. This may involve slowing of contractile rate, slow myosin gene induction, increase in oxidative metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0005955    calcineurin complex    A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0098794    postsynapse    The part of a synapse that is part of the post-synaptic cell.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.

Chain B,D   (CANB1_HUMAN | P63098)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0004723    calcium-dependent protein serine/threonine phosphatase activity    Catalysis of the reactions: protein serine phosphate + H2O = protein serine + phosphate; and protein threonine phosphate + H2O = protein threonine + phosphate. These reactions require the presence of calcium ions.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
biological process
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0007223    Wnt signaling pathway, calcium modulating pathway    The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors leads to an increase in intracellular calcium and activation of protein kinase C (PKC).
    GO:0033173    calcineurin-NFAT signaling cascade    Any intracellular signal transduction in which the signal is passed on within the cell by activation of a member of the NFAT protein family as a consequence of NFAT dephosphorylation by Ca(2+)-activated calcineurin. The cascade begins with calcium-dependent activation of the phosphatase calcineurin. Calcineurin dephosphorylates multiple phosphoserine residues on NFAT, resulting in the translocation of NFAT to the nucleus. The cascade ends with regulation of transcription by NFAT. The calcineurin-NFAT cascade lies downstream of many cell surface receptors, including G-protein coupled receptors (GPCRs) and receptor tyrosine kinases (RTKs) that signal to mobilize calcium ions (Ca2+).
    GO:0051533    positive regulation of NFAT protein import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus.
    GO:1900740    positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway    Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
cellular component
    GO:0005955    calcineurin complex    A heterodimeric calcium ion and calmodulin dependent protein phosphatase composed of catalytic and regulatory subunits; the regulatory subunit is very similar in sequence to calmodulin.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.

Chain E   (AKAP5_HUMAN | P24588)
molecular function
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0050811    GABA receptor binding    Interacting selectively and non-covalently with the gamma-aminobutyric acid (GABA, 4-aminobutyrate) receptor.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0008179    adenylate cyclase binding    Interacting selectively and non-covalently with the enzyme adenylate cyclase.
    GO:0045296    cadherin binding    Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0051018    protein kinase A binding    Interacting selectively and non-covalently with any subunit of protein kinase A.
    GO:0034237    protein kinase A regulatory subunit binding    Interacting selectively and non-covalently with one or both of the regulatory subunits of protein kinase A.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0030346    protein phosphatase 2B binding    Interacting selectively and non-covalently with the enzyme protein phosphatase 2B.
biological process
    GO:0036394    amylase secretion    The controlled release of amylase from a cell.
    GO:0043624    cellular protein complex disassembly    The disaggregation of a protein complex into its constituent components, occurring at the level of an individual cell. Protein complexes may have other associated non-protein prosthetic groups, such as nucleic acids, metal ions or carbohydrate groups.
    GO:0071417    cellular response to organonitrogen compound    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond.
    GO:0007268    chemical synaptic transmission    The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
    GO:0021766    hippocampus development    The progression of the hippocampus over time from its initial formation until its mature state.
    GO:0060135    maternal process involved in female pregnancy    A reproductive process occurring in the mother that allows an embryo or fetus to develop within it.
    GO:0007194    negative regulation of adenylate cyclase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of adenylate cyclase activity.
    GO:0043271    negative regulation of ion transport    Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0043267    negative regulation of potassium ion transport    Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051533    positive regulation of NFAT protein import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of an NFAT protein from the cytoplasm to the nucleus.
    GO:0045762    positive regulation of adenylate cyclase activity    Any process that activates or increases the frequency, rate or extent of adenylate cyclase activity.
    GO:0030819    positive regulation of cAMP biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
    GO:0010524    positive regulation of calcium ion transport into cytosol    Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components.
    GO:0050775    positive regulation of dendrite morphogenesis    Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis.
    GO:0010739    positive regulation of protein kinase A signaling    Any process that increases the rate, frequency, or extent of protein kinase A signaling. PKA signaling is the series of reactions, mediated by the intracellular serine/threonine kinase protein kinase A, which occurs as a result of a single trigger reaction or compound.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0006605    protein targeting    The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
    GO:0051602    response to electrical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.
    GO:0014850    response to muscle activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0021510    spinal cord development    The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.
cellular component
    GO:0032279    asymmetric synapse    A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0032590    dendrite membrane    The portion of the plasma membrane surrounding a dendrite.
    GO:0043198    dendritic shaft    Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
    GO:0043197    dendritic spine    A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including "thin", "stubby", "mushroom", and "branched", with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
    GO:0032591    dendritic spine membrane    The portion of the plasma membrane surrounding a dendritic spine.
    GO:0031527    filopodium membrane    The portion of the plasma membrane surrounding a filopodium.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0014069    postsynaptic density of dendrite    An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

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        AKAP5_HUMAN | P245882h9r
        CANB1_HUMAN | P630981aui 1m63 1mf8 2p6b 4f0z 4or9 4ora 4orc 5sve
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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3LL8)