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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HSP70 FROM CRYPTOSPORIDIUM PARVUM (CGD2_20)
 
Authors :  J. C. Pizarro, A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bo C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, T. Hill Structural Genomics Consortium (Sgc)
Date :  24 Dec 09  (Deposition) - 02 Feb 10  (Release) - 15 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp Binding Domain, Heat Shock Protein, Structural Genomics, Atp- Binding, Nucleotide Binding, Stress Response, Structural Genomics Consortium, Sgc, Nucleotide-Binding, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Pizarro, A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, T. Hills, Structural Genomics Consortium (Sgc)
Crystal Structure Of The N-Terminal Domain Of Hsp70 From Cryptosporidium Parvum (Cgd2_20)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK 70 (HSP70) PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 15-396)
    Gene: CGD2_20
    Organism Scientific: CRYPTOSPORIDIUM PARVUM
    Organism Taxid: 353152
    Strain: IOWA II

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:27 , THR A:28 , LYS A:86 , GLU A:191 , THR A:220 , SO4 A:402 , HOH A:419 , HOH A:426 , HOH A:486BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWAREASP A:25 , GLU A:191 , ASP A:215 , VAL A:386 , SO4 A:401 , MG A:405BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREARG A:111 , LYS A:114 , ASP A:115 , ARG A:252 , GLU A:255 , TYR A:326BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWARESER A:294 , GLN A:296 , HOH A:423 , HOH A:611 , ASN B:273 , ARG B:275BINDING SITE FOR RESIDUE SO4 A 404
5AC5SOFTWARETHR A:28 , THR A:29 , TYR A:30 , SO4 A:402 , HOH A:426 , HOH A:529BINDING SITE FOR RESIDUE MG A 405
6AC6SOFTWAREGLY B:27 , THR B:28 , LYS B:86 , GLU B:191 , THR B:220 , SO4 B:402 , HOH B:411 , HOH B:423 , HOH B:496BINDING SITE FOR RESIDUE SO4 B 401
7AC7SOFTWAREASP B:25 , GLU B:191 , ASP B:215 , VAL B:386 , SO4 B:401 , MG B:404BINDING SITE FOR RESIDUE SO4 B 402
8AC8SOFTWAREARG A:64 , LYS A:142 , GLU A:145 , HOH A:496 , LYS B:144 , GLN B:154 , LYS B:156 , GLY B:182BINDING SITE FOR RESIDUE SO4 B 403
9AC9SOFTWARETHR B:29 , TYR B:30 , GLY B:218 , SO4 B:402 , HOH B:496BINDING SITE FOR RESIDUE MG B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L6Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3L6Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L6Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L6Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3L6Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:381
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:381
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393 
         Q5CPP8_CRYPI    14 EGPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILN 394
               SCOP domains d3l6qa1 A:18-204 automated matches                                                                                                                                                         d3l6qa2 A:205-398 automated matches                                                                                                                                                                SCOP domains
               CATH domains 3l6qA01 A:18-82,A:139-203,A:378-398                              3l6qA02 A:83-138  [code=3.30.30.30, no name defined]    3l6qA01 A:18-82,A:139-203,A:378-398                              3l6qA03 A:204-244,A:330-377              3l6qA04 A:245-329 Actin; Chain A, domain 4                                           3l6qA03 A:204-244,A:330-377                     3l6qA01               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhh.......ee.hhhhh......hhhhhhhhh....eeeeehhheeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.........eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6q A  18 GGPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILN 398
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397 


Chain B from PDB  Type:PROTEIN  Length:379
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:381
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393 
         Q5CPP8_CRYPI    14 EGPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILN 394
               SCOP domains d3l6qb1 B:18-204 automated matches                                                                                                                                                         --d3l6qb2 B:207-398 automated matches                                                                                                                                                              SCOP domains
               CATH domains 3l6qB01 B:18-82,B:139-203,B:378-398                              3l6qB02 B:83-138  [code=3.30.30.30, no name defined]    3l6qB01 B:18-82,B:139-203,B:378-398                              3  l6qB03 B:204-244,B:330-377            3l6qB04 B:245-329 Actin; Chain A, domain 4                                           3l6qB03 B:204-244,B:330-377                     3l6qB01               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhh........ee.hhhhh......hhhhhhhhh....eeee.hhh.eeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.....--..eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l6q B  18 GGPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKK--GERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILN 398
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197      |207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397 
                                                                                                                                                                                                                    204  |                                                                                                                                                                                               
                                                                                                                                                                                                                       207
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3L6Q)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5CPP8_CRYPI | Q5CPP8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5CPP8_CRYPI | Q5CPP8: 3kvg 3l4i

(-) Related Entries Specified in the PDB File

3kvg THE SAME PROTEIN COMPLEXED WITH AMPPNP
3l4i THE SAME PROTEIN COMPLEXED WITH ADP AND INORGANIC PHOSPHATE