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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HSP70 (CGD2_20) FROM CRYPTOSPORIDIUM PARVUM IN COMPLEX WITH AMPPNP
 
Authors :  A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, J. C. Pizarro, T. Hills, Structural Genomics Consortium (Sgc)
Date :  30 Nov 09  (Deposition) - 19 Jan 10  (Release) - 31 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp Binding Domain, Heat Shock Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Atp-Binding, Nucleotide-Binding, Stress Response, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, J. C. Pizarro, T. Hills, Structural Genomics Consortium (Sgc)
Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEAT SHOCK 70 (HSP70) PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 15-396)
    Gene: CGD2_20
    Organism Scientific: CRYPTOSPORIDIUM PARVUM
    Organism Taxid: 353152
    Strain: IOWA II

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO4Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:27 , THR A:28 , THR A:29 , TYR A:30 , GLY A:217 , GLY A:218 , GLY A:219 , THR A:220 , GLY A:246 , GLU A:285 , LYS A:288 , ARG A:289 , SER A:292 , GLY A:355 , GLY A:356 , SER A:357 , ARG A:359 , ILE A:360 , ASP A:383 , HOH A:404 , HOH A:444 , HOH A:492 , HOH A:521 , HOH A:611 , HOH A:644 , HOH A:690 , HOH A:714 , HOH A:726 , HOH A:760BINDING SITE FOR RESIDUE ANP A 401
2AC2SOFTWAREGLN A:283 , THR A:298 , VAL B:41 , ASP B:42 , ILE B:43 , ARG B:51 , HOH B:501BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWARELYS A:71 , GLU A:247 , ASP A:250 , ARG A:281 , HOH A:428BINDING SITE FOR RESIDUE EDO A 403
4AC4SOFTWAREGLY B:27 , THR B:28 , THR B:29 , TYR B:30 , GLY B:217 , GLY B:218 , GLY B:219 , THR B:220 , GLY B:246 , GLU B:285 , LYS B:288 , ARG B:289 , SER B:292 , GLY B:355 , GLY B:356 , SER B:357 , ARG B:359 , ASP B:383 , HOH B:406 , HOH B:421 , HOH B:427 , HOH B:432 , HOH B:446 , HOH B:539 , HOH B:570 , HOH B:632 , HOH B:638BINDING SITE FOR RESIDUE ANP B 401
5AC5SOFTWARELYS A:144 , GLN A:154 , LYS A:156 , ARG B:64 , LYS B:142 , HOH B:551 , HOH B:558BINDING SITE FOR RESIDUE PO4 B 402
6AC6SOFTWAREARG B:87 , ASP B:101 , HIS B:104 , TRP B:105 , HIS B:243 , HOH B:496BINDING SITE FOR RESIDUE EDO B 403
7AC7SOFTWAREILE B:180 , HOH B:541 , HOH B:619BINDING SITE FOR RESIDUE EDO B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KVG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KVG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KVG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KVG)

(-) Exons   (0, 0)

(no "Exon" information available for 3KVG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:381
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:381
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394 
         Q5CPP8_CRYPI    15 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNG 395
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3kvgA01 A:19-82,A:139-203,A:378-398                             3kvgA02 A:83-138  [code=3.30.30.30, no name defined]    3kvgA01 A:19-82,A:139-203,A:378-398                              3kvgA03 A:204-244,A:330-377              3kvgA04 A:245-329 Actin; Chain A, domain 4                                           3kvgA03 A:204-244,A:330-377                     3kvgA01              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhh.......ee.hhhhh......hhhhhhhhh....eeee.hhh.eeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvg A  19 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNG 399
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398 


Chain B from PDB  Type:PROTEIN  Length:382
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:382
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394  
         Q5CPP8_CRYPI    15 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNGE 396
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3kvgB01 B:19-82,B:139-203,B:378-398                             3kvgB02 B:83-138  [code=3.30.30.30, no name defined]    3kvgB01 B:19-82,B:139-203,B:378-398                              3kvgB03 B:204-244,B:330-377              3kvgB04 B:245-329 Actin; Chain A, domain 4                                           3kvgB03 B:204-244,B:330-377                     3kvgB01              -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhh........ee.hhhhh......hhhhhhhhh....eeee.hhh.eeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvg B  19 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNGE 400
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KVG)

(-) CATH Domains  (3, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KVG)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5CPP8_CRYPI | Q5CPP8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  3kvg
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5CPP8_CRYPI | Q5CPP8: 3l4i 3l6q

(-) Related Entries Specified in the PDB File

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