3L4I - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HSP70 (CGD2_20) FROM CRYPTOSPORIDIUM PARVUM IN COMPLEX WITH ADP AND INORGANIC PHOSPHATE

Authors :   J. C. Pizarro, A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, T. Hills, Structural Genomics Consortium (Sgc)

Date :   20 Dec 09 (Deposition) - 19 Jan 10 (Release) - 31 Mar 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Atp Binding Domain, Heat Shock Protein, Structural Genomics, Atp-Binding, Nucleotide Binding, Stress Response, Structural Genomics Consortium, Sgc, Nucleotide-Binding, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. C. Pizarro, A. K. Wernimont, A. Hutchinson, H. Sullivan, J. Lew, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, T. Hills
Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Adp And Inorganic Phosphate
To Be Published
PubMed: search

Molecule 1 - HEAT SHOCK 70 (HSP70) PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN (UNP RESIDUES 15-396)
	Gene	:	CGD2_20
	Organism Scientific	:	CRYPTOSPORIDIUM PARVUM
	Organism Taxid	:	353152
	Strain	:	IOWA II

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	CL	1	Ligand/Ion	CHLORIDE ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
4	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:27 , THR A:28 , THR A:29 , TYR A:30 , GLY A:217 , GLY A:218 , GLY A:246 , GLU A:285 , LYS A:288 , ARG A:289 , SER A:292 , GLY A:355 , GLY A:356 , SER A:357 , ARG A:359 , PO4 A:402 , HOH A:405 , HOH A:435 , HOH A:456 , HOH A:536 , HOH A:559 , HOH A:570 , HOH A:634	BINDING SITE FOR RESIDUE ADP A 401
2	AC2	SOFTWARE	GLY A:27 , THR A:28 , LYS A:86 , GLU A:191 , THR A:220 , ADP A:401 , HOH A:419 , HOH A:480	BINDING SITE FOR RESIDUE PO4 A 402
3	AC3	SOFTWARE	PHE A:221 , ASP A:222 , GLY A:240 , ASP A:241 , THR A:242	BINDING SITE FOR RESIDUE EDO A 403
4	AC4	SOFTWARE	GLY B:27 , THR B:28 , THR B:29 , TYR B:30 , GLY B:217 , GLY B:218 , GLY B:246 , GLU B:285 , LYS B:288 , ARG B:289 , SER B:292 , GLY B:355 , GLY B:356 , SER B:357 , ARG B:359 , ASP B:383 , PO4 B:402 , HOH B:405 , HOH B:410 , HOH B:433 , HOH B:470 , HOH B:475 , HOH B:487 , HOH B:540 , HOH B:556	BINDING SITE FOR RESIDUE ADP B 401
5	AC5	SOFTWARE	GLY B:27 , THR B:28 , LYS B:86 , PRO B:163 , GLU B:191 , THR B:220 , ADP B:401 , HOH B:410 , HOH B:415 , HOH B:475 , HOH B:482 , HOH B:540 , HOH B:551	BINDING SITE FOR RESIDUE PO4 B 402
6	AC6	SOFTWARE	ASN B:46 , ASP B:47 , LYS B:142	BINDING SITE FOR RESIDUE CL B 403
7	AC7	SOFTWARE	THR B:28 , ARG B:87 , TYR B:165	BINDING SITE FOR RESIDUE EDO B 404

(no "SS Bond" information available for 3L4I)

(no "Cis Peptide Bond" information available for 3L4I)

(no "SAP(SNP)/Variant" information available for 3L4I)

(no "PROSITE Motif" information available for 3L4I)

(no "Exon" information available for 3L4I)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:381
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:381
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394 
         Q5CPP8_CRYPI    15 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNG 395
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3l4iA01 A:19-82,A:139-203,A:378-398                             3l4iA02 A:83-138  [code=3.30.30.30, no name defined]    3l4iA01 A:19-82,A:139-203,A:378-398                              3l4iA03 A:204-244,A:330-377              3l4iA04 A:245-329 Actin; Chain A, domain 4                                           3l4iA03 A:204-244,A:330-377                     3l4iA01              - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhhhhhh...ee.hhhhh......hhhhhhhhh....eeee.hhh.eeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeee........eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l4i A  19 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNG 399
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398

Chain B from PDB  Type:PROTEIN  Length:381
 aligned with Q5CPP8_CRYPI | Q5CPP8 from UniProtKB/TrEMBL  Length:682

    Alignment length:382
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394  
         Q5CPP8_CRYPI    15 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKDAGMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNGE 396
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3l4iB01 B:19-82,B:139-203,B:378-398                             3l4iB02 B:83-138  [code=3.30.30.30, no name defined]    3l4iB01 B:19-82,B:139-203,B:378-398                              3l4iB03 B:204-244,B:330-377              3l4iB04 B:245-329 Actin; Chain A, domain 4                                           3l4iB03 B:2 04-244,B:330-377                    3l4iB01              -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhhhhhhhh.ee.hhhhh......hhhhhhhhh....eeeeehhheeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhh.hhhhhhhhhh-..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l4i B  19 GPAIGIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYVAFTETERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDQAVQSDMTHWPFKVVRGPKDKPIISVNYLGEKKEFHAEEISAMVLQKMKEISEAYLGRQIKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGMDLTTNARALRRLRTQCERAKRTLSSSTQATIELDSLYEGIDYSVAISRARFEELCADYFRATLAPVEKVLKD-GMDKRSVHDVVLVGGSTRIPKVQALIQEFFNGKEPCKAINPDEAVAYGAAVQAAILNGE 400
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338 | |   348       358       368       378       388       398  
                                                                                                                                                                                                                                                                                                                                                           340 |                                                          
                                                                                                                                                                                                                                                                                                                                                             342

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3L4I)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Defensin A-like (149)

Homologous Superfamily: [code=3.30.30.30, no name defined] (60)

Cryptosporidium parvum. Organism_taxid: 353152. Strain: iowa ii. (3)

1a	3l4iA02	A:83-138
1b	3l4iB02	B:83-138

Topology: Nucleotidyltransferase; domain 5 (788)

Homologous Superfamily: [code=3.30.420.40, no name defined] (217)

Cryptosporidium parvum. Organism_taxid: 353152. Strain: iowa ii. (3)

2a	3l4iA01	A:19-82,A:139-203,A:378-398
2b	3l4iB01	B:19-82,B:139-203,B:378-398
2c	3l4iA03	A:204-244,A:330-377
2d	3l4iB03	B:204-244,B:330-377

Architecture: Alpha-Beta Complex (3881)

Topology: Actin; Chain A, domain 4 (156)

Homologous Superfamily: Actin; Chain A, domain 4 (155)

Cryptosporidium parvum. Organism_taxid: 353152. Strain: iowa ii. (3)

3a	3l4iA04	A:245-329
3b	3l4iB04	B:245-329

(no "Pfam Domain" information available for 3L4I)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q5CPP8_CRYPI | Q5CPP8)

molecular function
	GO:0005524		ATP binding		Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166		nucleotide binding		Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

Asymmetric Unit
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