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(-) Description

Title :  STRUCTURE OF CLPP IN COMPLEX WITH ADEP2 IN MONOCLINIC CRYSTAL FORM
 
Authors :  B. -G. Lee, H. Brotz-Oesterhelt, H. K. Song
Date :  25 Nov 09  (Deposition) - 23 Mar 10  (Release) - 10 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Keywords :  Hydrolase, Protease, Serine Protease, Stress Response, A54556A, Enopeptin, Depsipeptide, Antibiotics, Hydrolase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. -G. Lee, E. Y. Park, K. -E. Lee, H. Jeon, K. H. Sung, H. Paulsen, H. Rubsamen-Schaeff, H. Brotz-Oesterhelt, H. K. Song
Structures Of Clpp In Complex With Acyldepsipeptide Antibiotics Reveal Its Activation Mechanism
Nat. Struct. Mol. Biol. V. 17 471 2010
PubMed-ID: 20305655  |  Reference-DOI: 10.1038/NSMB.1787

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.21.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CLPP, YVDN, BSU34540
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: ENDOPEPTIDASE CLP, CASEINOLYTIC PROTEASE, STRESS PROTEIN G7
 
Molecule 2 - ACYLDEPSIPEPTIDE 2
    Chains: H, I, J, K, L, M, N
    Engineered: YES
    Other Details: DESIGNED PEPTIDE BASED ON ADEP1
    Synonym: ADEP2
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 35)

Asymmetric/Biological Unit (5, 35)
No.NameCountTypeFull Name
1CXP7Mod. Amino AcidCYCLOHEXANE PROPIONIC ACID
2MP87Mod. Amino Acid(4R)-4-METHYL-L-PROLINE
3NHE7Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4WFP7Mod. Amino Acid3,5-DIFLUORO-L-PHENYLALANINE
5YCP7Mod. Amino Acid(2S)-PIPERIDINE-2-CARBOXYLIC ACID

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:69 , ILE A:70 , THR A:71 , ARG A:141 , HOH A:226 , HOH A:328BINDING SITE FOR RESIDUE NHE A 501
02AC2SOFTWAREILE B:70 , THR B:71 , ARG B:141 , HOH B:265 , MET C:94BINDING SITE FOR RESIDUE NHE B 502
03AC3SOFTWARESER C:69 , ILE C:70 , THR C:71 , ARG C:141 , HOH C:226 , MET D:94BINDING SITE FOR RESIDUE NHE C 503
04AC4SOFTWAREILE D:70 , THR D:71 , ARG D:141 , HOH D:274 , PRO E:66BINDING SITE FOR RESIDUE NHE D 504
05AC5SOFTWARESER E:69 , ILE E:70 , THR E:71 , ARG E:141 , HOH E:321 , MET F:94BINDING SITE FOR RESIDUE NHE E 505
06AC6SOFTWARESER F:69 , ILE F:70 , THR F:71 , ARG F:141 , PRO G:66 , MET G:94BINDING SITE FOR RESIDUE NHE F 506
07AC7SOFTWARESER G:69 , ILE G:70 , THR G:71 , ARG G:141 , HOH G:266BINDING SITE FOR RESIDUE NHE G 507
08AC8SOFTWAREVAL A:44 , LEU A:48 , THR A:79 , PHE A:82 , HOH A:203 , ASP B:26 , ILE B:28 , SER B:60 , TYR B:62 , ILE B:92 , TYR B:112 , LEU B:114 , HOH H:43BINDING SITE FOR CHAIN H OF ACYLDEPSIPEPTIDE 2
09AC9SOFTWAREASP A:26 , ILE A:28 , SER A:60 , TYR A:62 , ILE A:92 , TYR A:112 , LEU A:114 , VAL G:44 , LEU G:48 , PHE G:49 , THR G:79 , PHE G:82BINDING SITE FOR CHAIN I OF ACYLDEPSIPEPTIDE 2
10BC1SOFTWAREVAL E:44 , LEU E:48 , THR E:79 , PHE E:82 , HOH E:222 , ASP F:26 , ILE F:28 , SER F:60 , TYR F:62 , ILE F:92 , TYR F:112BINDING SITE FOR CHAIN J OF ACYLDEPSIPEPTIDE 2
11BC2SOFTWARELEU B:48 , THR B:79 , PHE B:82 , LEU C:23 , ASP C:26 , SER C:60 , TYR C:62 , ILE C:92 , TYR C:112 , LEU C:114 , LEU C:189 , HOH K:135 , HOH K:261 , HOH K:300BINDING SITE FOR CHAIN K OF ACYLDEPSIPEPTIDE 2
12BC3SOFTWAREVAL C:44 , LEU C:48 , THR C:79 , PHE C:82 , LEU D:23 , ASP D:26 , SER D:60 , TYR D:62 , ILE D:92 , TYR D:112 , LEU D:114 , HOH D:226 , HOH L:270BINDING SITE FOR CHAIN L OF ACYLDEPSIPEPTIDE 2
13BC4SOFTWAREVAL D:44 , LEU D:48 , THR D:79 , PHE D:82 , LEU E:23 , ASP E:26 , ILE E:28 , SER E:60 , TYR E:62 , ILE E:92 , TYR E:112 , LEU E:114 , LEU E:189 , HOH E:201 , HOH M:342BINDING SITE FOR CHAIN M OF ACYLDEPSIPEPTIDE 2
14BC5SOFTWARELEU F:48 , THR F:79 , PHE F:82 , HOH F:211 , ASP G:26 , ILE G:28 , TYR G:62 , ILE G:92 , LEU G:114 , LEU G:189BINDING SITE FOR CHAIN N OF ACYLDEPSIPEPTIDE 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KTJ)

(-) Cis Peptide Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1Ser H:3 -Pro H:4
2Pro H:4 -Ycp H:5
3Ala H:6 -Mp8 H:7
4Ser I:3 -Pro I:4
5Pro I:4 -Ycp I:5
6Ala I:6 -Mp8 I:7
7Ser J:3 -Pro J:4
8Pro J:4 -Ycp J:5
9Ala J:6 -Mp8 J:7
10Ser K:3 -Pro K:4
11Pro K:4 -Ycp K:5
12Ala K:6 -Mp8 K:7
13Ser L:3 -Pro L:4
14Pro L:4 -Ycp L:5
15Ala L:6 -Mp8 L:7
16Ser M:3 -Pro M:4
17Pro M:4 -Ycp M:5
18Ala M:6 -Mp8 M:7
19Ser N:3 -Pro N:4
20Pro N:4 -Ycp N:5
21Ala N:6 -Mp8 N:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KTJ)

(-) PROSITE Motifs  (2, 14)

Asymmetric/Biological Unit (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLP_PROTEASE_SERPS00381 Endopeptidase Clp serine active site.CLPP_BACSU90-101
 
 
 
 
 
 		  7A:89-100
B:89-100
C:89-100
D:89-100
E:89-100
F:89-100
G:89-100
2CLP_PROTEASE_HISPS00382 Endopeptidase Clp histidine active site.CLPP_BACSU112-125
 
 
 
 
 
 		  7A:111-124
B:111-124
C:111-124
D:111-124
E:111-124
F:111-124
G:111-124

(-) Exons   (0, 0)

(no "Exon" information available for 3KTJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktja_ A: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjA00 A:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj A  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain B from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktjb_ B: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjB00 B:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj B  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain C from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktjc_ C: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjC00 C:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj C  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain D from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktjd_ D: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjD00 D:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh...eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeehhhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj D  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain E from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktje_ E: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjE00 E:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj E  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain F from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktjf_ F: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjF00 F:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj F  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain G from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_BACSU | P80244 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:174
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    
           CLPP_BACSU    19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 192
               SCOP domains d3ktjg_ G: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3ktjG00 G:18-191 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
           Pfam domains (1) CLP_protease-3ktjG01 G:18-191                                                                                                                                                  Pfam domains (1)
           Pfam domains (2) CLP_protease-3ktjG02 G:18-191                                                                                                                                                  Pfam domains (2)
           Pfam domains (3) CLP_protease-3ktjG03 G:18-191                                                                                                                                                  Pfam domains (3)
           Pfam domains (4) CLP_protease-3ktjG04 G:18-191                                                                                                                                                  Pfam domains (4)
           Pfam domains (5) CLP_protease-3ktjG05 G:18-191                                                                                                                                                  Pfam domains (5)
           Pfam domains (6) CLP_protease-3ktjG06 G:18-191                                                                                                                                                  Pfam domains (6)
           Pfam domains (7) CLP_protease-3ktjG07 G:18-191                                                                                                                                                  Pfam domains (7)
         Sec.struct. author hhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhhh....eee....eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh....eeeehhhhhhhh...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ktj G  18 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKILTH 191
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187    


Chain H from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj H   1 xfSPxAp   7
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain I from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj I   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain J from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj J   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain K from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj K   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain L from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj L   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain M from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj M   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8


Chain N from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 3ktj N   1 xfSPxAp   7
                            ||  | |
                            ||  | |
                            1-CXP |
                             2-WFP|
                                5-YCP
                                  7-MP8
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 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 7)

Asymmetric/Biological Unit
(-)
Clan: ClpP_crotonase (88)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (CLPP_BACSU | P80244)
molecular function
    GO:0004176    ATP-dependent peptidase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3ktj
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  CLPP_BACSU | P80244
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  3.4.21.92
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP_BACSU | P80244: 3ktg 3kth 3kti 3ktk 3tt6 3tt7

(-) Related Entries Specified in the PDB File

3ktg CLPP IN MONOCLINIC CRYSTAL FORM
3kth CLPP IN ORTHOROMBIC CRYSTAL FORM
3kti CLPP IN COMPLEX WITH ADEP1
3ktk CLPP IN COMPLEX WITH ADEP2 IN TRICLINIC CRYSTAL FORM