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(-) Description

Title :  DESIGNED TPR MODULE (CTPR390) IN COMPLEX WITH ITS PEPTIDE-LIGAND (HSP90 PEPTIDE)
 
Authors :  A. L. Cortajarena, J. Wang, L. Regan
Date :  22 Oct 09  (Deposition) - 02 Feb 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,G,H,I,J,K
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,G  (1x)
Biol. Unit 3:  C,I  (1x)
Biol. Unit 4:  D,J  (1x)
Biol. Unit 5:  E,K  (1x)
Keywords :  Designed Protein, Tetratricopeptide Repeat (Tpr), Hsp90 Binding, Repeat Protein, Tpr-Ligand Complex, Superhelical Structure, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. L. Cortajarena, J. Wang, L. Regan
Crystal Structure Of A Designed Tetratricopeptide Repeat Module In Complex With Its Peptide Ligand.
Febs J. V. 277 1058 2010
PubMed-ID: 20089039  |  Reference-DOI: 10.1111/J.1742-4658.2009.07549.X

(-) Compounds

Molecule 1 - CTPR390
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTB
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644
 
Molecule 2 - HSP90 MEEVD PEPTIDE
    Chains: G, H, I, J, K
    Engineered: YES
    Other Details: THIS SEQUENCE COMPRISES THE 5 C-TERMINAL RESIDUES OF HSP90
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEGHIJK
Biological Unit 1 (1x): A     H   
Biological Unit 2 (1x):  B   G    
Biological Unit 3 (1x):   C    I  
Biological Unit 4 (1x):    D    J 
Biological Unit 5 (1x):     E    K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1ACE5Mod. Amino AcidACETYL GROUP
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 3KD7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KD7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser C:8 -Ala C:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KD7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KD7)

(-) Exons   (0, 0)

(no "Exon" information available for 3KD7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3kd7 A   7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
                                    16        26        36        46        56        66        76        86        96       106  


Chain B from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3kd7 B   8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
                                    17        27        37        47        57        67        77        87        97       107


Chain C from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3kd7 C   7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
                                    16        26        36        46        56        66        76        86        96       106 


Chain D from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3kd7 D   7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
                                    16        26        36        46        56        66        76        86        96       106 


Chain E from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3kd7 E   8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
                                    17        27        37        47        57        67        77        87        97       107


Chain G from PDB  Type:PROTEIN  Length:6
 aligned with Q9H2A1_HUMAN | Q9H2A1 from UniProtKB/TrEMBL  Length:29

    Alignment length:6
                             1    
                             |    
         Q9H2A1_HUMAN     - -MEEVD   5
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3kd7 G   0 xMEEVD   5
                            |     
                            |     
                            0-ACE 


Chain H from PDB  Type:PROTEIN  Length:6
 aligned with Q9H2A1_HUMAN | Q9H2A1 from UniProtKB/TrEMBL  Length:29

    Alignment length:6
                             1    
                             |    
         Q9H2A1_HUMAN     - -MEEVD   5
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3kd7 H   0 xMEEVD   5
                            |     
                            0-ACE 


Chain I from PDB  Type:PROTEIN  Length:6
 aligned with Q9H2A1_HUMAN | Q9H2A1 from UniProtKB/TrEMBL  Length:29

    Alignment length:6
                             1    
                             |    
         Q9H2A1_HUMAN     - -MEEVD   5
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3kd7 I   0 xMEEVD   5
                            |     
                            0-ACE 


Chain J from PDB  Type:PROTEIN  Length:6
 aligned with Q9H2A1_HUMAN | Q9H2A1 from UniProtKB/TrEMBL  Length:29

    Alignment length:6
                             1    
                             |    
         Q9H2A1_HUMAN     - -MEEVD   5
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3kd7 J   0 xMEEVD   5
                            |     
                            0-ACE 


Chain K from PDB  Type:PROTEIN  Length:6
 aligned with Q9H2A1_HUMAN | Q9H2A1 from UniProtKB/TrEMBL  Length:29

    Alignment length:6
                             1    
                             |    
         Q9H2A1_HUMAN     - -MEEVD   5
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 3kd7 K   0 xMEEVD   5
                            |     
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KD7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KD7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KD7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3KD7)

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  Cis Peptide Bonds
    Ser C:8 - Ala C:9   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9H2A1_HUMAN | Q9H2A1: 2bug
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(-) Related Entries Specified in the PDB File

1elr TPR2A DOMAIN IN COMPLEX WITH HSP90 PEPTIDE
1elw TPR1 DOMAIN IN COMPLEX WITH HSP70 PEPTIDE
1na0 DESIGNED SCAFFOLD CTPR3
1na3 DESIGNED SCAFFOLD CTPR2
2avp DESIGNED CTPR8 SUPERHELIX
2c2l CHIP UBIQUITIN LIGASE IN COMPLEX WITH HSP90 PEPTIDE
3fwv REDESIGNED TPR PROTEIN IN COMPLEX WITH MEEVF PEPTIDE