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(-) Description

Title :  X-RAY STRUCTURE OF THE RHODANESE-LIKE DOMAIN OF THE ALR3790 PROTEIN FROM ANABAENA SP. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NSR437C.
 
Authors :  S. Vorobiev, Y. Chen, J. Seetharaman, M. Maglaqui, C. Ciccosanti, L. Ma T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structur Genomics Consortium (Nesg)
Date :  16 Oct 09  (Deposition) - 27 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  A (1x),C (1x)
Biol. Unit 4:  B (1x),D (1x)
Biol. Unit 5:  C,D  (1x)
Keywords :  Alr3790, Rhodanese-Like, Nsr437C, Nesg, Structural Genomics. , Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, Y. Chen, J. Seetharaman, M. Maglaqui, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
X-Ray Structure Of The Rhodanese-Like Domain Of The Alr3790 Protein From Anabaena Sp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALR3790 PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21 (DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ALR3790
    Organism Scientific: NOSTOC SP.
    Organism Taxid: 103690
    Strain: PCC 7120

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 2 (1x): AB  
Biological Unit 3 (1x): A (1x) C (1x) 
Biological Unit 4 (1x):  B (1x) D (1x)
Biological Unit 5 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3K9R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K9R)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:33 -Pro A:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K9R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K9R)

(-) Exons   (0, 0)

(no "Exon" information available for 3K9R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:102
                                    29        39        49        59        69        79        89        99       109       119  
         Q8YQN0_NOSS1    20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEG 121
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh---...eeeee..hhhhhhhhee...ee....hhhhhhhhhh....eeeee..hhhhhhhhhhhhhh.....eee..hhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3k9r A  20 SDAHVLKSRL---EPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEL 121
                                    29   |    39        49   |  | 59        69        79        89        99       109       119  
                                    29  33                  53-MSE|                                                               
                                                               56-MSE                                                             
                                                                 58-MSE                                                           


Chain B from PDB  Type:PROTEIN  Length:101
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:101
                                    30        40        50        60        70        80        90       100       110       120 
         Q8YQN0_NOSS1    21 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEG 121
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh......eeeee..hhhhhhh.ee...ee....hhhhhhhhhh....eeeee..hhhhhhhhhhhhhh....eeee..hhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3k9r B  21 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEL 121
                                    30        40        50  |  | |60        70        80        90       100       110       120 
                                                           53-MSE|                                                               
                                                              56-MSE                                                             
                                                                58-MSE                                                           


Chain C from PDB  Type:PROTEIN  Length:106
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:106
                                    25        35        45        55        65        75        85        95       105       115      
         Q8YQN0_NOSS1    16 IEPQSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEG 121
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh......eeeee..hhhhhhhhee...ee.hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3k9r C  16 IEPQSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEL 121
                                    25        35        45       |55| |     65        75        85        95       105       115      
                                                                53-MSE|                                                               
                                                                   56-MSE                                                             
                                                                     58-MSE                                                           


Chain D from PDB  Type:PROTEIN  Length:98
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:101
                                    30        40        50        60        70        80        90       100       110       120 
         Q8YQN0_NOSS1    21 DAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEG 121
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Rhodanese   -3k9rD01 D:21-115                                                                  ------ Pfam domains (1)
           Pfam domains (2) Rhodanese   -3k9rD02 D:21-115                                                                  ------ Pfam domains (2)
           Pfam domains (3) Rhodanese   -3k9rD03 D:21-115                                                                  ------ Pfam domains (3)
           Pfam domains (4) Rhodanese   -3k9rD04 D:21-115                                                                  ------ Pfam domains (4)
         Sec.struct. author hhhhhhhhh---...eeeee..hhhhhhhhee...ee.hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3k9r D  21 DAHVLKSRL---EPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEL 121
                                    |-  |     40        50  |  | |60        70        80        90       100       110       120 
                                   29  33                  53-MSE|                                                               
                                                              56-MSE                                                             
                                                                58-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K9R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K9R)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: Rhodanese] (33)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3K9R)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8YQN0_NOSS1 | Q8YQN0: 2kl3 3hix 3ilm

(-) Related Entries Specified in the PDB File

2kl3 SAME PROTEIN, DIFFERENT CONSTRUCT; NMR STRUCTURE
3hix SAME PROTEIN, DIFFERENT CONSTRUCT RELATED ID: NSR437C RELATED DB: TARGETDB
3ilm SAME PROTEIN, DIFFERENT CONSTRUCT