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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALR3790 PROTEIN FROM ANABAENA SP. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NSR437H
 
Authors :  S. Vorobiev, Y. Chen, M. Maglaqui, C. Ciccosanti, L. Mao, R. Xiao, T. B. A G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomic Consortium (Nesg)
Date :  07 Aug 09  (Deposition) - 22 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Alr3790, Rhodanese-Like, Nsr437H, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, Y. Chen, M. Maglaqui, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALR3790 PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PET 21-23C
    Fragment: SEQUENCE DATABASE RESIDUES 20-151
    Gene: ALR3790
    Organism Scientific: NOSTOC SP.
    Organism Taxid: 103690
    Strain: PCC 7120

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1MN5Ligand/IonMANGANESE (II) ION
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:51 , GLU A:120 , HOH B:352 , HOH B:412BINDING SITE FOR RESIDUE MN A 204
2AC2SOFTWAREGLU B:61 , HOH B:333BINDING SITE FOR RESIDUE MN B 202
3AC3SOFTWAREHIS C:51 , GLU C:120 , HOH C:351 , GLU D:120 , HOH D:318BINDING SITE FOR RESIDUE MN C 201
4AC4SOFTWAREASP B:76 , HIS C:101 , HOH C:360BINDING SITE FOR RESIDUE MN C 205
5AC5SOFTWAREHIS D:51 , GLU D:120BINDING SITE FOR RESIDUE MN D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ILM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3ILM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ILM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ILM)

(-) Exons   (0, 0)

(no "Exon" information available for 3ILM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:125
                                    29        39        49        59        69        79        89        99       109       119       129       139     
         Q8YQN0_NOSS1    20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTPAGADDYNVVSRMQNHL 144
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeee..hhhhhhhhee...ee.hhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhhh...eeee.-------------hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ilm A  20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII-------------VSRmQNHL 144
                                    29        39        49   |  | 59        69        79        89        99       109       119   |     -       139|    
                                                            53-MSE|                                                              123           137  |    
                                                               56-MSE                                                                             140-MSE
                                                                 58-MSE                                                                                  


Chain B from PDB  Type:PROTEIN  Length:128
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:137
                                                                                                                                                             151     
                                    29        39        49        59        69        79        89        99       109       119       129       139       149 |     
         Q8YQN0_NOSS1    20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTPAGADDYNVVSRMQNHLENQKKEV-----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeee..hhhhhhhhee...ee....hhhhhhhh......eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhhh...eeee.---------hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ilm B  20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII---------DYNVVSRmQNHLENQKKEVLEHHH 156
                                    29        39        49   |  | 59        69        79        89        99       109       119   |     -   |   139|      149       
                                                            53-MSE|                                                              123       133      |                
                                                               56-MSE                                                                             140-MSE            
                                                                 58-MSE                                                                                              


Chain C from PDB  Type:PROTEIN  Length:126
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:137
                                                                                                                                                             151     
                                    29        39        49        59        69        79        89        99       109       119       129       139       149 |     
         Q8YQN0_NOSS1    20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTPAGADDYNVVSRMQNHLENQKKEV-----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeee..hhhhhhhhee...ee.hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhh....eeee.-----------hhhhhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ilm C  20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII-----------NVVSRmQNHLENQKKEVLEHHH 156
                                    29        39        49   |  | 59        69        79        89        99       109       119   |     -     | 139|      149       
                                                            53-MSE|                                                              123         135    |                
                                                               56-MSE                                                                             140-MSE            
                                                                 58-MSE                                                                                              


Chain D from PDB  Type:PROTEIN  Length:125
 aligned with Q8YQN0_NOSS1 | Q8YQN0 from UniProtKB/TrEMBL  Length:151

    Alignment length:137
                                                                                                                                                             151     
                                    29        39        49        59        69        79        89        99       109       119       129       139       149 |     
         Q8YQN0_NOSS1    20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTPAGADDYNVVSRMQNHLENQKKEV-----   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...eeeee..hhhhhhhhee...ee.hhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh....eee..hhhhhhhhh...eeee.------------hhhhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ilm D  20 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHImGAmAmPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII------------VVSRmQNHLENQKKEVLEHHH 156
                                    29        39        49   |  | 59        69        79        89        99       109       119   |     -      |139|      149       
                                                            53-MSE|                                                              123          136   |                
                                                               56-MSE                                                                             140-MSE            
                                                                 58-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3ILM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ILM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ILM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3ILM)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8YQN0_NOSS1 | Q8YQN0: 2kl3 3hix 3k9r

(-) Related Entries Specified in the PDB File

3hix TRUNCATED VERSION OF ALR3790 PROTEIN RELATED ID: NSR437H RELATED DB: TARGETDB