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(-) Description

Title :  DYNAMIC DOMAINS OF SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE FROM PIG HEART.
 
Authors :  S. Coker, A. Lloyd, E. Mitchell, G. R. Lewis, P. Shoolingin-Jordan, A. R
Date :  09 Oct 09  (Deposition) - 07 Jul 10  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Scot, Coa Transferase, Dynamic Domain, Glycerol, Mitochondrion, Transferase, Transit Peptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. F. Coker, A. J. Lloyd, E. Mitchell, G. R. Lewis, A. R. Coker, P. M. Shoolingin-Jordan
The High-Resolution Structure Of Pig Heart Succinyl-Coa:3-Oxoacid Coenzyme A Transferase.
Acta Crystallogr. , Sect. D V. 66 797 2010
PubMed-ID: 20606260  |  Reference-DOI: 10.1107/S0907444910018366

(-) Compounds

Molecule 1 - SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE 1, MITOCHONDRIAL
    Chains: A, D, C, B
    EC Number: 2.8.3.5
    Fragment: RESIDUES 40-520
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Other Details: HEART

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:51 , ASN A:52 , TYR A:76 , GLN A:99 , LYS A:329BINDING SITE FOR RESIDUE CL A 6000
2AC2SOFTWAREPHE D:25 , ASN D:51 , ASN D:52 , TYR D:76 , GLN D:99 , LYS D:329BINDING SITE FOR RESIDUE CL D 6001
3AC3SOFTWAREPHE C:25 , ASN C:51 , ASN C:52 , GLN C:99 , ILE C:284 , GLU C:305 , ALA C:327 , GLY C:385 , HOH C:5257 , HOH C:5334BINDING SITE FOR RESIDUE GOL C 5000
4AC4SOFTWAREVAL C:391 , SER C:393 , ALA C:394 , THR C:396 , VAL C:398 , CYS C:426 , ASN C:428 , HOH C:5490BINDING SITE FOR RESIDUE GOL C 5001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K6M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K6M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K6M)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_TRANSF_1PS01273 Coenzyme A transferases signature 1.SCOT1_PIG55-70
 
 
 		  4A:16-31
B:16-31
C:16-31
D:16-31
2COA_TRANSF_2PS01274 Coenzyme A transferases signature 2.SCOT1_PIG341-349
 
 
 		  4A:302-310
B:302-310
C:302-310
D:302-310
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_TRANSF_1PS01273 Coenzyme A transferases signature 1.SCOT1_PIG55-70
 
 
 		  2A:16-31
B:16-31
-
-
2COA_TRANSF_2PS01274 Coenzyme A transferases signature 2.SCOT1_PIG341-349
 
 
 		  2A:302-310
B:302-310
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COA_TRANSF_1PS01273 Coenzyme A transferases signature 1.SCOT1_PIG55-70
 
 
 		  2-
-
C:16-31
D:16-31
2COA_TRANSF_2PS01274 Coenzyme A transferases signature 2.SCOT1_PIG341-349
 
 
 		  2-
-
C:302-310
D:302-310

(-) Exons   (0, 0)

(no "Exon" information available for 3K6M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 519
               SCOP domains d3k6ma1 A:1-246 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                          ---------------d3k6ma2 A:262-480 Succinate:CoA transferase, C-terminal domain                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee..............---------------hhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k6m A   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVR---------------VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 480
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     |   -         - |     270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480
                                                                                                                                                                                                                                                                               246             262                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:461
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 519
               SCOP domains d3k6mb1 B:1-246 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                                        d3k6mb2 B:261-480 Succinate:CoA tr   ansferase, C-terminal domain                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeeee.........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee..............--------------hhhhhhhhhhhhhh...eeeee..hhhhhhhh..---..eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee......--.....hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k6m B   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVR--------------NVRERIIKRAALEFEDGMYANLGIGIPLLASNFI---MTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPG--VKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 480
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     |   -         -|      270       280       290   |   300       310       320       330       340       350       360       370       | -|      390       400       410       420       430       440       450       460       470       480
                                                                                                                                                                                                                                                                               246            261                              294 298                                                                             378  |                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                                                      381                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:466
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 519
               SCOP domains d3k6mc1 C:1-246 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                          --------------d3k6mc2 C:261-480 Succinate:CoA transferase, C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeeee.........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee..............--------------hhhhhhhhhhhhhh...eeeee..hhhhhhhhh......eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee..ee...ee....hhhhhh.....eeeee...eehhhee.ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k6m C   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVR--------------NVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 480
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240     |   -         -|      270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480
                                                                                                                                                                                                                                                                               246            261                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:462
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:480
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 519
               SCOP domains d3k6md1 D:1-248 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                                         d3k6md2 D:262-480 Succinate:CoA transferase, C-terminal domain                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD01 D:263-462                                                                                                                                                                             ------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD02 D:263-462                                                                                                                                                                             ------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD03 D:263-462                                                                                                                                                                             ------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD04 D:263-462                                                                                                                                                                             ------------------ Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD05 D:263-462                                                                                                                                                                             ------------------ Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD06 D:263-462                                                                                                                                                                             ------------------ Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD07 D:263-462                                                                                                                                                                             ------------------ Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-3k6mD08 D:263-462                                                                                                                                                                             ------------------ Pfam domains (8)
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eee.-----..ee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee................-------------hhhhhhhhhhhhh....eeee..hhhhhhhhhh......eeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee...eehhhee.ee..............eee...eeeeee...eeeeeee....hhhhhhhhh....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k6m D   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKY-----IAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKE-------------VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT 480
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    |    -|      150       160       170       180       190       200       210       220       230       240       | -         - |     270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480
                                                                                                                                                                135   141                                                                                                        248           262
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K6M)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: ISOCOT_Fold (53)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (SCOT1_PIG | Q29551)
molecular function
    GO:0008260    3-oxoacid CoA-transferase activity    Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA.
    GO:0008410    CoA-transferase activity    Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0046950    cellular ketone body metabolic process    The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism.
    GO:0046952    ketone body catabolic process    The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

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        SCOT1_PIG | Q29551: 1m3e 1o9l 1ooy 1ooz 1ope 2nrb 2nrc 3oxo

(-) Related Entries Specified in the PDB File

1m3e SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (SELENOMETHIONINE)
1o9l SUCCINATE:COENZYME-A TRANSFERASE (PIG HEART)
1ooy SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
1ooz DELETION MUTANT OF SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
1ope DELETION MUTANT OF SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
2nrb C28S MUTANT OF SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART