1OOY - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART

Authors :   A. M. Coros, L. Swenson, W. T. Wolodko, M. E. Fraser

Date :   04 Mar 03 (Deposition) - 27 Apr 04 (Release) - 16 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A,B  (1x)

Keywords :   Alpha/Beta Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. M. Coros, L. Swenson, W. T. Wolodko, M. E. Fraser
Structure Of The Coa Transferase From Pig Heart To 1. 7 A Resolution.
Acta Crystallogr. , Sect. D V. 60 1717 2004
PubMed-ID: 15388917 | Reference-DOI: 10.1107/S0907444904017974

Molecule 1 - SUCCINYL-COA:3-KETOACID-COENZYME A TRANSFERASE, MITOCHONDRIAL PRECURSOR
	Chains	:	A, B
	EC Number	:	2.8.3.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PT7-7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	SUCCINYL-COA:3-KETOACID COA TRANSFERASE MONOMER
	Gene	:	OXCT OR SCOT
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	K	4	Ligand/Ion	POTASSIUM ION
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:424 , GLN A:425 , HOH A:1080 , HOH A:1093 , HOH A:1181 , HOH A:1183	BINDING SITE FOR RESIDUE K A 993
2	AC2	SOFTWARE	SER A:393 , THR A:396 , CYS A:426 , ASN A:428 , HOH A:1145 , HOH A:1167	BINDING SITE FOR RESIDUE K A 994
3	AC3	SOFTWARE	SER B:393 , THR B:396 , VAL B:398 , CYS B:426 , ASN B:428 , HOH B:1120 , HOH B:1228	BINDING SITE FOR RESIDUE K B 995
4	AC4	SOFTWARE	LYS B:424 , GLN B:425 , HOH B:1154 , HOH B:1175 , HOH B:1205	BINDING SITE FOR RESIDUE K B 996
5	AC5	SOFTWARE	TYR B:122 , GLN B:156 , HIS B:157 , ARG B:441 , HOH B:1144 , HOH B:1154 , HOH B:1422	BINDING SITE FOR RESIDUE PO4 B 997

(no "SS Bond" information available for 1OOY)

(no "Cis Peptide Bond" information available for 1OOY)

(no "SAP(SNP)/Variant" information available for 1OOY)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_PIG	55-70	2	A:16-31 B:16-31
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_PIG	341-349	2	A:302-310 B:302-310

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_PIG	55-70	4	A:16-31 B:16-31
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_PIG	341-349	4	A:302-310 B:302-310

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COA_TRANSF_1	PS01273	Coenzyme A transferases signature 1.	SCOT1_PIG	55-70	2	A:16-31 B:16-31
2	COA_TRANSF_2	PS01274	Coenzyme A transferases signature 2.	SCOT1_PIG	341-349	2	A:302-310 B:302-310

(no "Exon" information available for 1OOY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:463
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:481
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519 
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 520
               SCOP domains d1ooya2 A:1-242 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                      ------------------d1ooya1 A:261-481 Succinate:CoA transferase, C-terminal domain                                                                                                                                                                SCOP domains
               CATH domains 1ooyA01 A:1-233 Glutaconate Coenzyme A-transferase                                                                                                                                                                                       ---------------------------1ooyA02 A:261-474 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                         ------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeeee........hhhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee..........------------------hhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee....hhhhh..ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ooy A   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER------------------NVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 |       -         -|      270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480 
                                                                                                                                                                                                                                                                           242                261

Chain B from PDB  Type:PROTEIN  Length:468
 aligned with SCOT1_PIG | Q29551 from UniProtKB/Swiss-Prot  Length:520

    Alignment length:481
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519 
            SCOT1_PIG    40 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLGDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 520
               SCOP domains d1ooyb2 B:1-248 Succinate:CoA transferase, N-terminal domain                                                                                                                                                                                            -------------d1ooyb1 B:262-481 Succinate:CoA transferase, C-terminal domain                                                                                                                                                               SCOP domains
               CATH domains 1ooyB01 B:1-233 Glutaconate Coenzyme A-transferase                                                                                                                                                                                       ----------------------------1ooyB02 B:262-474 Glutaconate Coenzyme A-transferase; Chain B                                                                                                                                                        ------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-1ooyB01 B:263-462                                                                                                                                                                             ------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-1ooyB02 B:263-462                                                                                                                                                                             ------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-1ooyB03 B:263-462                                                                                                                                                                             ------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CoA_trans-1ooyB04 B:263-462                                                                                                                                                                             ------------------- Pfam domains (4)
         Sec.struct. author .eee.hhhhhhh......eeee........hhhhhhhhhhhh...eeeee........hhhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeeeeeeee....ee.hhhhh.hhhhhh..eeeeeeeeeeee.....hhhhh..hhhhh.eeee................-------------hhhhhhhhhhhhh....eeee..hhhhhhhh........eeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.............hhhhhh.....eeeee...ee...ee.ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------COA_TRANSF_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COA_TRANS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ooy B   1 TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKE-------------VRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       | -         - |     270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480 
                                                                                                                                                                                                                                                                                 248           262

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaconate Coenzyme A-transferase (14)

Homologous Superfamily: Glutaconate Coenzyme A-transferase (14)

Pig (Sus scrofa) (7)

1a	1ooyA01	A:1-233
1b	1ooyB01	B:1-233

Topology: Glutaconate Coenzyme A-transferase; Chain B (12)

Homologous Superfamily: Glutaconate Coenzyme A-transferase; Chain B (12)

Pig (Sus scrofa) (7)

2a	1ooyA02	A:261-474
2b	1ooyB02	B:262-474

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ISOCOT_Fold (53)

Family: CoA_trans (10)

Sus scrofa (Pig) (7)

1a	CoA_trans-1ooyB01	B:263-462
1b	CoA_trans-1ooyB02	B:263-462
1c	CoA_trans-1ooyB03	B:263-462
1d	CoA_trans-1ooyB04	B:263-462

Asymmetric Unit(hide GO term definitions)

Chain A,B (SCOT1_PIG | Q29551)

molecular function
	GO:0008260	3-oxoacid CoA-transferase activity	Catalysis of the reaction: succinyl-CoA + a 3-oxo acid = succinate + a 3-oxo-acyl-CoA.
	GO:0008410	CoA-transferase activity	Catalysis of the transfer of a coenzyme A (CoA) group from one compound (donor) to another (acceptor).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046950	cellular ketone body metabolic process	The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism.
	GO:0046952	ketone body catabolic process	The chemical reactions and pathways resulting in the breakdown of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Ketone bodies can be used as an energy source as an alternative to glucose. Utilization of ketone bodies in peripheral tissues involves conversion of acetoacetate to acetoacetyl-CoA, which is then converted to two molecules of acetyl-CoA.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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	SCOT1_PIG \| Q29551	:	1m3e 1o9l 1ooz 1ope 2nrb 2nrc 3k6m 3oxo

1m3e	SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (SELENOMETHIONINE) MONOCLINIC SPACE GROUP P21

Description

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Ligands, Modified Residues, Ions (2, 5)

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