3JYH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   HUMAN DIPEPTIDYL PEPTIDASE DPP7

Authors :   E. Dobrovetsky, A. Dong, A. Seitova, L. Crombett, S. Paganon, D. Cossar A. M. Edwards, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. Hassel, L. S A. Bochkarev, Structural Genomics Consortium (Sgc)

Date :   21 Sep 09 (Deposition) - 13 Oct 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.19

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Structural Genomics Consortium, Sgc, Aminopeptidase, Cleavage On Pair Of Basic Residues, Cytoplasmic Vesicle, Glycoprotein, Hydrolase, Lysosome, Protease, Serine Protease, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Dobrovetsky, A. Dong, A. Seitova, L. Crombett, S. Paganon, D. Cossar, A. M. Edwards, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. Hassel, L. Shewchuk, A. Bochkarev
Human Dipeptidyl Peptidase Dpp7
To Be Published
PubMed: search

Molecule 1 - DIPEPTIDYL-PEPTIDASE 2
	Chains	:	A, B, C, D
	EC Number	:	3.4.14.2
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9 INSECT CELLS
	Expression System Plasmid	:	PFHMSP-LIC-N
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector	:	BACULOVIRUS
	Expression System Vector Type	:	PLASMID
	Fragment	:	PEPTIDASE DOMAIN: UNP RESIDUES 28-492
	Gene	:	DPP2, DPP7, QPP
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIPEPTIDYL-PEPTIDASE II, DPP II, DIPEPTIDYL AMINOPEPTIDASE II, QUIESCENT CELL PROLINE DIPEPTIDASE, DIPEPTIDYL PEPTIDASE 7

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 25)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	NAG	22	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (2, 13)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (2, 12)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:82 , ALA A:83 , ASN A:86	BINDING SITE FOR RESIDUE NAG A 1
02	AC2	SOFTWARE	NAG A:494	BINDING SITE FOR RESIDUE BMA A 493
03	AC3	SOFTWARE	ARG A:225 , ASP A:229 , BMA A:493 , NAG A:498 , HOH A:676	BINDING SITE FOR RESIDUE NAG A 494
04	AC4	SOFTWARE	LYS A:228 , ASN A:363 , NAG A:494 , HOH A:548 , HOH A:584 , HOH A:608	BINDING SITE FOR RESIDUE NAG A 498
05	AC5	SOFTWARE	ASN A:50 , HOH A:877 , LEU B:383 , TRP B:389	BINDING SITE FOR RESIDUE NAG A 495
06	AC6	SOFTWARE	ARG A:307 , ASN A:315 , GLY A:318 , GLU A:320 , TYR A:323 , NAG A:497 , HOH A:581 , HOH A:1246	BINDING SITE FOR RESIDUE NAG A 496
07	AC7	SOFTWARE	NAG A:496 , HOH A:581 , HOH A:1119	BINDING SITE FOR RESIDUE NAG A 497
08	AC8	SOFTWARE	TRP B:82 , ALA B:83 , ASN B:86	BINDING SITE FOR RESIDUE NAG B 1
09	AC9	SOFTWARE	NAG B:494	BINDING SITE FOR RESIDUE BMA B 493
10	BC1	SOFTWARE	ARG B:225 , LYS B:228 , ASP B:229 , BMA B:493 , NAG B:497 , HOH B:563	BINDING SITE FOR RESIDUE NAG B 494
11	BC2	SOFTWARE	ARG B:225 , LYS B:228 , ASN B:363 , NAG B:494 , HOH B:557 , HOH B:582	BINDING SITE FOR RESIDUE NAG B 497
12	BC3	SOFTWARE	ARG B:307 , ASN B:315 , GLY B:318 , GLU B:320 , CYS B:322 , TYR B:323 , NAG B:496 , HOH B:516 , HOH B:663 , HOH B:922	BINDING SITE FOR RESIDUE NAG B 495
13	BC4	SOFTWARE	NAG B:495 , HOH B:663	BINDING SITE FOR RESIDUE NAG B 496
14	BC5	SOFTWARE	ARG C:225 , NAG C:493	BINDING SITE FOR RESIDUE BMA C 1
15	BC6	SOFTWARE	BMA C:1 , ARG C:225 , LYS C:228 , ASP C:229 , NAG C:498 , HOH C:586	BINDING SITE FOR RESIDUE NAG C 493
16	BC7	SOFTWARE	PHE C:224 , ARG C:225 , LYS C:228 , ASN C:363 , NAG C:493 , HOH C:540 , HOH C:545	BINDING SITE FOR RESIDUE NAG C 498
17	BC8	SOFTWARE	ASN C:50 , TRP D:389	BINDING SITE FOR RESIDUE NAG C 494
18	BC9	SOFTWARE	ASP C:80 , TRP C:82 , ALA C:83 , ASN C:86 , HOH C:1252	BINDING SITE FOR RESIDUE NAG C 495
19	CC1	SOFTWARE	ARG C:307 , ASN C:315 , GLY C:318 , GLU C:320 , HIS C:321 , CYS C:322 , TYR C:323 , NAG C:497 , HOH C:892	BINDING SITE FOR RESIDUE NAG C 496
20	CC2	SOFTWARE	NAG C:496 , HOH C:892 , HOH C:1201	BINDING SITE FOR RESIDUE NAG C 497
21	CC3	SOFTWARE	TRP D:82 , ASN D:86 , HOH D:1266	BINDING SITE FOR RESIDUE NAG D 1
22	CC4	SOFTWARE	ARG D:221 , PHE D:224 , ARG D:225 , LYS D:228 , ASN D:363 , NAG D:494 , HOH D:497 , HOH D:539	BINDING SITE FOR RESIDUE NAG D 493
23	CC5	SOFTWARE	ARG D:225 , ASP D:229 , NAG D:493 , HOH D:985	BINDING SITE FOR RESIDUE NAG D 494
24	CC6	SOFTWARE	ARG D:307 , ASN D:315 , GLY D:318 , GLU D:320 , HIS D:321 , CYS D:322 , TYR D:323 , NAG D:496	BINDING SITE FOR RESIDUE NAG D 495
25	CC7	SOFTWARE	NAG D:495	BINDING SITE FOR RESIDUE NAG D 496

Asymmetric Unit

No.	Residues
1	A:216	-	A:293
2	A:246	-	A:322
3	A:332	-	A:338
4	A:352	-	A:382
5	B:216	-	B:293
6	B:246	-	B:322
7	B:332	-	B:338
8	B:352	-	B:382
9	C:216	-	C:293
10	C:246	-	C:322
11	C:332	-	C:338
12	C:352	-	C:382
13	D:216	-	D:293
14	D:246	-	D:322
15	D:332	-	D:338
16	D:352	-	D:382

Asymmetric Unit

No.	Residues
1	Asp D:28	-	Pro D:29

Asymmetric Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047087	A	89	G	DPP2_HUMAN	Polymorphism	10747049	A/B/C/D	A	89	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047087	A	89	G	DPP2_HUMAN	Polymorphism	10747049	A/B	A	89	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047087	A	89	G	DPP2_HUMAN	Polymorphism	10747049	C/D	A	89	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 3JYH)

(no "Exon" information available for 3JYH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:452
 aligned with DPP2_HUMAN | Q9UHL4 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:452
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477  
           DPP2_HUMAN    28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee............eeeeeeeee..........eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhh.......hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhh.....eeeee....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....ee...ee..hhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhh...........hhhhhhhhhhhh.....................hhhhhhhhhhhhhh.....hhhhhhhh.........eeeeee..hhhhhhh........eeeeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyh A  28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477

Chain B from PDB  Type:PROTEIN  Length:452
 aligned with DPP2_HUMAN | Q9UHL4 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:452
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477  
           DPP2_HUMAN    28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee............eeeeeeeee..........eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhh.......hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhh.....eeeee....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....ee...ee..hhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhh...........hhhhhhhhhhhh.....................hhhhhhhhhhhhhh.....hhhhhhhh.........eeeeee....hhhhh........eeeeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyh B  28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARRE 479
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477

Chain C from PDB  Type:PROTEIN  Length:451
 aligned with DPP2_HUMAN | Q9UHL4 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:451
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477 
           DPP2_HUMAN    28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARR 478
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee............eeeeeeeee..........eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhh.....eeeee....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....ee...ee..hhhhhhhhhhh...hhhhhhhhhhhhhhh.........................hhhhhhhhhhhh.....................hhhhhhhhhhhhhh.....hhhhhhhh.........eeeeee....hhhhh........eeeeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jyh C  28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARR 478
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477

Chain D from PDB  Type:PROTEIN  Length:450
 aligned with DPP2_HUMAN | Q9UHL4 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:450
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477
           DPP2_HUMAN    28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAAR 477
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------Peptidase_S28-3jyhD01 D:38-465                                                                                                                                                                                                                                                                                                                                                                                                              ------------ Pfam domains (1)
           Pfam domains (2) ----------Peptidase_S28-3jyhD02 D:38-465                                                                                                                                                                                                                                                                                                                                                                                                              ------------ Pfam domains (2)
           Pfam domains (3) ----------Peptidase_S28-3jyhD03 D:38-465                                                                                                                                                                                                                                                                                                                                                                                                              ------------ Pfam domains (3)
           Pfam domains (4) ----------Peptidase_S28-3jyhD04 D:38-465                                                                                                                                                                                                                                                                                                                                                                                                              ------------ Pfam domains (4)
         Sec.struct. author ....eeeeeeee............eeeeeeeee..........eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee..........hhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhh.....eeeee..hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....ee...ee..hhhhhhhhhhhh..hhhhhhhhhhhhhhh........hhhhhh...........hhhhhhhhhhhh.....................hhhhhhhhhhhhhh.....hhhhhhhh.........eeeeee..hhhhhhh........eeeeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jyh D  28 DPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAAR 477
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3JYH)

(no "CATH Domain" information available for 3JYH)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AB_hydrolase (347)

Family: Peptidase_S28 (2)

Homo sapiens (Human) (2)

1a	Peptidase_S28-3jyhD01	D:38-465
1b	Peptidase_S28-3jyhD02	D:38-465
1c	Peptidase_S28-3jyhD03	D:38-465
1d	Peptidase_S28-3jyhD04	D:38-465

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DPP2_HUMAN | Q9UHL4)

molecular function
	GO:0004177	aminopeptidase activity	Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
	GO:0008239	dipeptidyl-peptidase activity	Catalysis of the hydrolysis of N-terminal dipeptides from a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004185	serine-type carboxypeptidase activity	Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0031982	vesicle	Any small, fluid-filled, spherical organelle enclosed by membrane.

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	3jyh
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	3.4.14.2
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	DPP2_HUMAN \| Q9UHL4	:	3n0t 4ebb

(no "Related Entries Specified in the PDB File" available for 3JYH)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (2, 25)

Sites (25, 25)

SS Bonds (16, 16)

Cis Peptide Bonds (1, 1)

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