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Getting 'Biological Unit' information from database.
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3JYH
Biol. Unit 2
Info
Asym.Unit (313 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (153 KB)
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(1)
Title
:
HUMAN DIPEPTIDYL PEPTIDASE DPP7
Authors
:
E. Dobrovetsky, A. Dong, A. Seitova, L. Crombett, S. Paganon, D. Cossar A. M. Edwards, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. Hassel, L. S A. Bochkarev, Structural Genomics Consortium (Sgc)
Date
:
21 Sep 09 (Deposition) - 13 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Aminopeptidase, Cleavage On Pair Of Basic Residues, Cytoplasmic Vesicle, Glycoprotein, Hydrolase, Lysosome, Protease, Serine Protease, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Dobrovetsky, A. Dong, A. Seitova, L. Crombett, S. Paganon, D. Cossar, A. M. Edwards, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. Hassel, L. Shewchuk, A. Bochkarev
Human Dipeptidyl Peptidase Dpp7
To Be Published
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: BC5 (SOFTWARE)
02: BC6 (SOFTWARE)
03: BC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC5
SOFTWARE
ARG C:225 , NAG C:493
BINDING SITE FOR RESIDUE BMA C 1
02
BC6
SOFTWARE
BMA C:1 , ARG C:225 , LYS C:228 , ASP C:229 , NAG C:498 , HOH C:586
BINDING SITE FOR RESIDUE NAG C 493
03
BC7
SOFTWARE
PHE C:224 , ARG C:225 , LYS C:228 , ASN C:363 , NAG C:493 , HOH C:540 , HOH C:545
BINDING SITE FOR RESIDUE NAG C 498
04
BC8
SOFTWARE
ASN C:50 , TRP D:389
BINDING SITE FOR RESIDUE NAG C 494
05
BC9
SOFTWARE
ASP C:80 , TRP C:82 , ALA C:83 , ASN C:86 , HOH C:1252
BINDING SITE FOR RESIDUE NAG C 495
06
CC1
SOFTWARE
ARG C:307 , ASN C:315 , GLY C:318 , GLU C:320 , HIS C:321 , CYS C:322 , TYR C:323 , NAG C:497 , HOH C:892
BINDING SITE FOR RESIDUE NAG C 496
07
CC2
SOFTWARE
NAG C:496 , HOH C:892 , HOH C:1201
BINDING SITE FOR RESIDUE NAG C 497
08
CC3
SOFTWARE
TRP D:82 , ASN D:86 , HOH D:1266
BINDING SITE FOR RESIDUE NAG D 1
09
CC4
SOFTWARE
ARG D:221 , PHE D:224 , ARG D:225 , LYS D:228 , ASN D:363 , NAG D:494 , HOH D:497 , HOH D:539
BINDING SITE FOR RESIDUE NAG D 493
10
CC5
SOFTWARE
ARG D:225 , ASP D:229 , NAG D:493 , HOH D:985
BINDING SITE FOR RESIDUE NAG D 494
11
CC6
SOFTWARE
ARG D:307 , ASN D:315 , GLY D:318 , GLU D:320 , HIS D:321 , CYS D:322 , TYR D:323 , NAG D:496
BINDING SITE FOR RESIDUE NAG D 495
12
CC7
SOFTWARE
NAG D:495
BINDING SITE FOR RESIDUE NAG D 496
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_047087 (A89G, chain C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047087
A
89
G
DPP2_HUMAN
Polymorphism
10747049
C/D
A
89
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_S28_3jyhD01 (D:38-465)
1b: PFAM_Peptidase_S28_3jyhD02 (D:38-465)
1c: PFAM_Peptidase_S28_3jyhD03 (D:38-465)
1d: PFAM_Peptidase_S28_3jyhD04 (D:38-465)
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Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S28
(2)
Homo sapiens (Human)
(2)
1a
Peptidase_S28-3jyhD01
D:38-465
1b
Peptidase_S28-3jyhD02
D:38-465
1c
Peptidase_S28-3jyhD03
D:38-465
1d
Peptidase_S28-3jyhD04
D:38-465
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Chain C
Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (313 KB)
Header - Asym.Unit
Biol.Unit 1 (156 KB)
Header - Biol.Unit 1
Biol.Unit 2 (153 KB)
Header - Biol.Unit 2
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