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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN DIPEPTIDYL PEPTIDASE DPP7
Keywords STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, AMINOPEPTIDASE, CLEAVAGE ON PAIR OF BASIC RESIDUES, CYTOPLA VESICLE, GLYCOPROTEIN, HYDROLASE, LYSOSOME, PROTEASE, SERIN PROTEASE, ZYMOGEN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3JYH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIPEPTIDYL-PEPTIDASE 2  A 452 3467 0
2  Protein   DIPEPTIDYL-PEPTIDASE 2  B 452 3471 0
3  Protein   DIPEPTIDYL-PEPTIDASE 2  C 451 3467 0
4  Protein   DIPEPTIDYL-PEPTIDASE 2  D 450 3447 0
5  Ligand    E 3 0 39
6  Ligand    F 2 0 28
7  Ligand    G 3 0 39
8  Ligand    H 2 0 28
9  Ligand    I 3 0 39
10  Ligand    J 2 0 28
11  Ligand    K 2 0 28
12  Ligand    L 2 0 28
13  Ligand   DIPEPTIDYL-PEPTIDASE 2  A 2 0 28
14  Ligand   DIPEPTIDYL-PEPTIDASE 2  B 1 0 14
15  Ligand   DIPEPTIDYL-PEPTIDASE 2  C 2 0 28
16  Ligand   DIPEPTIDYL-PEPTIDASE 2  D 1 0 14
17 Water     946 0 946
total       2776 13852 1287
Proteins
Unit 1 ASP28 PRO29 GLY30 PHE31 GLN32 GLU33 ARG34 PHE35 PHE36 GLN37 GLN38 ARG39 LEU40 ASP41 HIS42 PHE43 ASN44 PHE45 GLU46 ARG47 PHE48 GLY49 ASN50 LYS51 THR52 PHE53 PRO54 GLN55 ARG56 PHE57 LEU58 VAL59 SER60 ASP61 ARG62 PHE63 TRP64 VAL65 ARG66 GLY67 GLU68 GLY69 PRO70 ILE71 PHE72 PHE73 TYR74 THR75 GLY76 ASN77 GLU78 GLY79 ASP80 VAL81 TRP82 ALA83 PHE84 ALA85 ASN86 ASN87 SER88 ALA89 PHE90 VAL91 ALA92 GLU93 LEU94 ALA95 ALA96 GLU97 ARG98 GLY99 ALA100 LEU101 LEU102 VAL103 PHE104 ALA105 GLU106 HIS107 ARG108 TYR109 TYR110 GLY111 LYS112 SER113 LEU114 PRO115 PHE116 GLY117 ALA118 GLN119 SER120 THR121 GLN122 ARG123 GLY124 HIS125 THR126 GLU127 LEU128 LEU129 THR130 VAL131 GLU132 GLN133 ALA134 LEU135 ALA136 ASP137 PHE138 ALA139 GLU140 LEU141 LEU142 ARG143 ALA144 LEU145 ARG146 ARG147 ASP148 LEU149 GLY150 ALA151 GLN152 ASP153 ALA154 PRO155 ALA156 ILE157 ALA158 PHE159 GLY160 GLY161 SER162 TYR163 GLY164 GLY165 MET166 LEU167 SER168 ALA169 TYR170 LEU171 ARG172 MET173 LYS174 TYR175 PRO176 HIS177 LEU178 VAL179 ALA180 GLY181 ALA182 LEU183 ALA184 ALA185 SER186 ALA187 PRO188 VAL189 LEU190 ALA191 VAL192 ALA193 GLY194 LEU195 GLY196 ASP197 SER198 ASN199 GLN200 PHE201 PHE202 ARG203 ASP204 VAL205 THR206 ALA207 ASP208 PHE209 GLU210 GLY211 GLN212 SER213 PRO214 LYS215 CYS216 THR217 GLN218 GLY219 VAL220 ARG221 GLU222 ALA223 PHE224 ARG225 GLN226 ILE227 LYS228 ASP229 LEU230 PHE231 LEU232 GLN233 GLY234 ALA235 TYR236 ASP237 THR238 VAL239 ARG240 TRP241 GLU242 PHE243 GLY244 THR245 CYS246 GLN247 PRO248 LEU249 SER250 ASP251 GLU252 LYS253 ASP254 LEU255 THR256 GLN257 LEU258 PHE259 MET260 PHE261 ALA262 ARG263 ASN264 ALA265 PHE266 THR267 VAL268 LEU269 ALA270 MET271 MET272 ASP273 TYR274 PRO275 TYR276 PRO277 THR278 ASP279 PHE280 LEU281 GLY282 PRO283 LEU284 PRO285 ALA286 ASN287 PRO288 VAL289 LYS290 VAL291 GLY292 CYS293 ASP294 ARG295 LEU296 LEU297 SER298 GLU299 ALA300 GLN301 ARG302 ILE303 THR304 GLY305 LEU306 ARG307 ALA308 LEU309 ALA310 GLY311 LEU312 VAL313 TYR314 ASN315 ALA316 SER317 GLY318 SER319 GLU320 HIS321 CYS322 TYR323 ASP324 ILE325 TYR326 ARG327 LEU328 TYR329 HIS330 SER331 CYS332 ALA333 ASP334 PRO335 THR336 GLY337 CYS338 GLY339 THR340 GLY341 PRO342 ASP343 ALA344 ARG345 ALA346 TRP347 ASP348 TYR349 GLN350 ALA351 CYS352 THR353 GLU354 ILE355 ASN356 LEU357 THR358 PHE359 ALA360 SER361 ASN362 ASN363 VAL364 THR365 ASP366 MET367 PHE368 PRO369 ASP370 LEU371 PRO372 PHE373 THR374 ASP375 GLU376 LEU377 ARG378 GLN379 ARG380 TYR381 CYS382 LEU383 ASP384 THR385 TRP386 GLY387 VAL388 TRP389 PRO390 ARG391 PRO392 ASP393 TRP394 LEU395 LEU396 THR397 SER398 PHE399 TRP400 GLY401 GLY402 ASP403 LEU404 ARG405 ALA406 ALA407 SER408 ASN409 ILE410 ILE411 PHE412 SER413 ASN414 GLY415 ASN416 LEU417 ASP418 PRO419 TRP420 ALA421 GLY422 GLY423 GLY424 ILE425 ARG426 ARG427 ASN428 LEU429 SER430 ALA431 SER432 VAL433 ILE434 ALA435 VAL436 THR437 ILE438 GLN439 GLY440 GLY441 ALA442 HIS443 HIS444 LEU445 ASP446 LEU447 ARG448 ALA449 SER450 HIS451 PRO452 GLU453 ASP454 PRO455 ALA456 SER457 VAL458 VAL459 GLU460 ALA461 ARG462 LYS463 LEU464 GLU465 ALA466 THR467 ILE468 ILE469 GLY470 GLU471 TRP472 VAL473 LYS474 ALA475 ALA476 ARG477 ARG478 GLU479
Unit 2 ASP28 PRO29 GLY30 PHE31 GLN32 GLU33 ARG34 PHE35 PHE36 GLN37 GLN38 ARG39 LEU40 ASP41 HIS42 PHE43 ASN44 PHE45 GLU46 ARG47 PHE48 GLY49 ASN50 LYS51 THR52 PHE53 PRO54 GLN55 ARG56 PHE57 LEU58 VAL59 SER60 ASP61 ARG62 PHE63 TRP64 VAL65 ARG66 GLY67 GLU68 GLY69 PRO70 ILE71 PHE72 PHE73 TYR74 THR75 GLY76 ASN77 GLU78 GLY79 ASP80 VAL81 TRP82 ALA83 PHE84 ALA85 ASN86 ASN87 SER88 ALA89 PHE90 VAL91 ALA92 GLU93 LEU94 ALA95 ALA96 GLU97 ARG98 GLY99 ALA100 LEU101 LEU102 VAL103 PHE104 ALA105 GLU106 HIS107 ARG108 TYR109 TYR110 GLY111 LYS112 SER113 LEU114 PRO115 PHE116 GLY117 ALA118 GLN119 SER120 THR121 GLN122 ARG123 GLY124 HIS125 THR126 GLU127 LEU128 LEU129 THR130 VAL131 GLU132 GLN133 ALA134 LEU135 ALA136 ASP137 PHE138 ALA139 GLU140 LEU141 LEU142 ARG143 ALA144 LEU145 ARG146 ARG147 ASP148 LEU149 GLY150 ALA151 GLN152 ASP153 ALA154 PRO155 ALA156 ILE157 ALA158 PHE159 GLY160 GLY161 SER162 TYR163 GLY164 GLY165 MET166 LEU167 SER168 ALA169 TYR170 LEU171 ARG172 MET173 LYS174 TYR175 PRO176 HIS177 LEU178 VAL179 ALA180 GLY181 ALA182 LEU183 ALA184 ALA185 SER186 ALA187 PRO188 VAL189 LEU190 ALA191 VAL192 ALA193 GLY194 LEU195 GLY196 ASP197 SER198 ASN199 GLN200 PHE201 PHE202 ARG203 ASP204 VAL205 THR206 ALA207 ASP208 PHE209 GLU210 GLY211 GLN212 SER213 PRO214 LYS215 CYS216 THR217 GLN218 GLY219 VAL220 ARG221 GLU222 ALA223 PHE224 ARG225 GLN226 ILE227 LYS228 ASP229 LEU230 PHE231 LEU232 GLN233 GLY234 ALA235 TYR236 ASP237 THR238 VAL239 ARG240 TRP241 GLU242 PHE243 GLY244 THR245 CYS246 GLN247 PRO248 LEU249 SER250 ASP251 GLU252 LYS253 ASP254 LEU255 THR256 GLN257 LEU258 PHE259 MET260 PHE261 ALA262 ARG263 ASN264 ALA265 PHE266 THR267 VAL268 LEU269 ALA270 MET271 MET272 ASP273 TYR274 PRO275 TYR276 PRO277 THR278 ASP279 PHE280 LEU281 GLY282 PRO283 LEU284 PRO285 ALA286 ASN287 PRO288 VAL289 LYS290 VAL291 GLY292 CYS293 ASP294 ARG295 LEU296 LEU297 SER298 GLU299 ALA300 GLN301 ARG302 ILE303 THR304 GLY305 LEU306 ARG307 ALA308 LEU309 ALA310 GLY311 LEU312 VAL313 TYR314 ASN315 ALA316 SER317 GLY318 SER319 GLU320 HIS321 CYS322 TYR323 ASP324 ILE325 TYR326 ARG327 LEU328 TYR329 HIS330 SER331 CYS332 ALA333 ASP334 PRO335 THR336 GLY337 CYS338 GLY339 THR340 GLY341 PRO342 ASP343 ALA344 ARG345 ALA346 TRP347 ASP348 TYR349 GLN350 ALA351 CYS352 THR353 GLU354 ILE355 ASN356 LEU357 THR358 PHE359 ALA360 SER361 ASN362 ASN363 VAL364 THR365 ASP366 MET367 PHE368 PRO369 ASP370 LEU371 PRO372 PHE373 THR374 ASP375 GLU376 LEU377 ARG378 GLN379 ARG380 TYR381 CYS382 LEU383 ASP384 THR385 TRP386 GLY387 VAL388 TRP389 PRO390 ARG391 PRO392 ASP393 TRP394 LEU395 LEU396 THR397 SER398 PHE399 TRP400 GLY401 GLY402 ASP403 LEU404 ARG405 ALA406 ALA407 SER408 ASN409 ILE410 ILE411 PHE412 SER413 ASN414 GLY415 ASN416 LEU417 ASP418 PRO419 TRP420 ALA421 GLY422 GLY423 GLY424 ILE425 ARG426 ARG427 ASN428 LEU429 SER430 ALA431 SER432 VAL433 ILE434 ALA435 VAL436 THR437 ILE438 GLN439 GLY440 GLY441 ALA442 HIS443 HIS444 LEU445 ASP446 LEU447 ARG448 ALA449 SER450 HIS451 PRO452 GLU453 ASP454 PRO455 ALA456 SER457 VAL458 VAL459 GLU460 ALA461 ARG462 LYS463 LEU464 GLU465 ALA466 THR467 ILE468 ILE469 GLY470 GLU471 TRP472 VAL473 LYS474 ALA475 ALA476 ARG477 ARG478 GLU479
Unit 3 ASP28 PRO29 GLY30 PHE31 GLN32 GLU33 ARG34 PHE35 PHE36 GLN37 GLN38 ARG39 LEU40 ASP41 HIS42 PHE43 ASN44 PHE45 GLU46 ARG47 PHE48 GLY49 ASN50 LYS51 THR52 PHE53 PRO54 GLN55 ARG56 PHE57 LEU58 VAL59 SER60 ASP61 ARG62 PHE63 TRP64 VAL65 ARG66 GLY67 GLU68 GLY69 PRO70 ILE71 PHE72 PHE73 TYR74 THR75 GLY76 ASN77 GLU78 GLY79 ASP80 VAL81 TRP82 ALA83 PHE84 ALA85 ASN86 ASN87 SER88 ALA89 PHE90 VAL91 ALA92 GLU93 LEU94 ALA95 ALA96 GLU97 ARG98 GLY99 ALA100 LEU101 LEU102 VAL103 PHE104 ALA105 GLU106 HIS107 ARG108 TYR109 TYR110 GLY111 LYS112 SER113 LEU114 PRO115 PHE116 GLY117 ALA118 GLN119 SER120 THR121 GLN122 ARG123 GLY124 HIS125 THR126 GLU127 LEU128 LEU129 THR130 VAL131 GLU132 GLN133 ALA134 LEU135 ALA136 ASP137 PHE138 ALA139 GLU140 LEU141 LEU142 ARG143 ALA144 LEU145 ARG146 ARG147 ASP148 LEU149 GLY150 ALA151 GLN152 ASP153 ALA154 PRO155 ALA156 ILE157 ALA158 PHE159 GLY160 GLY161 SER162 TYR163 GLY164 GLY165 MET166 LEU167 SER168 ALA169 TYR170 LEU171 ARG172 MET173 LYS174 TYR175 PRO176 HIS177 LEU178 VAL179 ALA180 GLY181 ALA182 LEU183 ALA184 ALA185 SER186 ALA187 PRO188 VAL189 LEU190 ALA191 VAL192 ALA193 GLY194 LEU195 GLY196 ASP197 SER198 ASN199 GLN200 PHE201 PHE202 ARG203 ASP204 VAL205 THR206 ALA207 ASP208 PHE209 GLU210 GLY211 GLN212 SER213 PRO214 LYS215 CYS216 THR217 GLN218 GLY219 VAL220 ARG221 GLU222 ALA223 PHE224 ARG225 GLN226 ILE227 LYS228 ASP229 LEU230 PHE231 LEU232 GLN233 GLY234 ALA235 TYR236 ASP237 THR238 VAL239 ARG240 TRP241 GLU242 PHE243 GLY244 THR245 CYS246 GLN247 PRO248 LEU249 SER250 ASP251 GLU252 LYS253 ASP254 LEU255 THR256 GLN257 LEU258 PHE259 MET260 PHE261 ALA262 ARG263 ASN264 ALA265 PHE266 THR267 VAL268 LEU269 ALA270 MET271 MET272 ASP273 TYR274 PRO275 TYR276 PRO277 THR278 ASP279 PHE280 LEU281 GLY282 PRO283 LEU284 PRO285 ALA286 ASN287 PRO288 VAL289 LYS290 VAL291 GLY292 CYS293 ASP294 ARG295 LEU296 LEU297 SER298 GLU299 ALA300 GLN301 ARG302 ILE303 THR304 GLY305 LEU306 ARG307 ALA308 LEU309 ALA310 GLY311 LEU312 VAL313 TYR314 ASN315 ALA316 SER317 GLY318 SER319 GLU320 HIS321 CYS322 TYR323 ASP324 ILE325 TYR326 ARG327 LEU328 TYR329 HIS330 SER331 CYS332 ALA333 ASP334 PRO335 THR336 GLY337 CYS338 GLY339 THR340 GLY341 PRO342 ASP343 ALA344 ARG345 ALA346 TRP347 ASP348 TYR349 GLN350 ALA351 CYS352 THR353 GLU354 ILE355 ASN356 LEU357 THR358 PHE359 ALA360 SER361 ASN362 ASN363 VAL364 THR365 ASP366 MET367 PHE368 PRO369 ASP370 LEU371 PRO372 PHE373 THR374 ASP375 GLU376 LEU377 ARG378 GLN379 ARG380 TYR381 CYS382 LEU383 ASP384 THR385 TRP386 GLY387 VAL388 TRP389 PRO390 ARG391 PRO392 ASP393 TRP394 LEU395 LEU396 THR397 SER398 PHE399 TRP400 GLY401 GLY402 ASP403 LEU404 ARG405 ALA406 ALA407 SER408 ASN409 ILE410 ILE411 PHE412 SER413 ASN414 GLY415 ASN416 LEU417 ASP418 PRO419 TRP420 ALA421 GLY422 GLY423 GLY424 ILE425 ARG426 ARG427 ASN428 LEU429 SER430 ALA431 SER432 VAL433 ILE434 ALA435 VAL436 THR437 ILE438 GLN439 GLY440 GLY441 ALA442 HIS443 HIS444 LEU445 ASP446 LEU447 ARG448 ALA449 SER450 HIS451 PRO452 GLU453 ASP454 PRO455 ALA456 SER457 VAL458 VAL459 GLU460 ALA461 ARG462 LYS463 LEU464 GLU465 ALA466 THR467 ILE468 ILE469 GLY470 GLU471 TRP472 VAL473 LYS474 ALA475 ALA476 ARG477 ARG478
Unit 4 ASP28 PRO29 GLY30 PHE31 GLN32 GLU33 ARG34 PHE35 PHE36 GLN37 GLN38 ARG39 LEU40 ASP41 HIS42 PHE43 ASN44 PHE45 GLU46 ARG47 PHE48 GLY49 ASN50 LYS51 THR52 PHE53 PRO54 GLN55 ARG56 PHE57 LEU58 VAL59 SER60 ASP61 ARG62 PHE63 TRP64 VAL65 ARG66 GLY67 GLU68 GLY69 PRO70 ILE71 PHE72 PHE73 TYR74 THR75 GLY76 ASN77 GLU78 GLY79 ASP80 VAL81 TRP82 ALA83 PHE84 ALA85 ASN86 ASN87 SER88 ALA89 PHE90 VAL91 ALA92 GLU93 LEU94 ALA95 ALA96 GLU97 ARG98 GLY99 ALA100 LEU101 LEU102 VAL103 PHE104 ALA105 GLU106 HIS107 ARG108 TYR109 TYR110 GLY111 LYS112 SER113 LEU114 PRO115 PHE116 GLY117 ALA118 GLN119 SER120 THR121 GLN122 ARG123 GLY124 HIS125 THR126 GLU127 LEU128 LEU129 THR130 VAL131 GLU132 GLN133 ALA134 LEU135 ALA136 ASP137 PHE138 ALA139 GLU140 LEU141 LEU142 ARG143 ALA144 LEU145 ARG146 ARG147 ASP148 LEU149 GLY150 ALA151 GLN152 ASP153 ALA154 PRO155 ALA156 ILE157 ALA158 PHE159 GLY160 GLY161 SER162 TYR163 GLY164 GLY165 MET166 LEU167 SER168 ALA169 TYR170 LEU171 ARG172 MET173 LYS174 TYR175 PRO176 HIS177 LEU178 VAL179 ALA180 GLY181 ALA182 LEU183 ALA184 ALA185 SER186 ALA187 PRO188 VAL189 LEU190 ALA191 VAL192 ALA193 GLY194 LEU195 GLY196 ASP197 SER198 ASN199 GLN200 PHE201 PHE202 ARG203 ASP204 VAL205 THR206 ALA207 ASP208 PHE209 GLU210 GLY211 GLN212 SER213 PRO214 LYS215 CYS216 THR217 GLN218 GLY219 VAL220 ARG221 GLU222 ALA223 PHE224 ARG225 GLN226 ILE227 LYS228 ASP229 LEU230 PHE231 LEU232 GLN233 GLY234 ALA235 TYR236 ASP237 THR238 VAL239 ARG240 TRP241 GLU242 PHE243 GLY244 THR245 CYS246 GLN247 PRO248 LEU249 SER250 ASP251 GLU252 LYS253 ASP254 LEU255 THR256 GLN257 LEU258 PHE259 MET260 PHE261 ALA262 ARG263 ASN264 ALA265 PHE266 THR267 VAL268 LEU269 ALA270 MET271 MET272 ASP273 TYR274 PRO275 TYR276 PRO277 THR278 ASP279 PHE280 LEU281 GLY282 PRO283 LEU284 PRO285 ALA286 ASN287 PRO288 VAL289 LYS290 VAL291 GLY292 CYS293 ASP294 ARG295 LEU296 LEU297 SER298 GLU299 ALA300 GLN301 ARG302 ILE303 THR304 GLY305 LEU306 ARG307 ALA308 LEU309 ALA310 GLY311 LEU312 VAL313 TYR314 ASN315 ALA316 SER317 GLY318 SER319 GLU320 HIS321 CYS322 TYR323 ASP324 ILE325 TYR326 ARG327 LEU328 TYR329 HIS330 SER331 CYS332 ALA333 ASP334 PRO335 THR336 GLY337 CYS338 GLY339 THR340 GLY341 PRO342 ASP343 ALA344 ARG345 ALA346 TRP347 ASP348 TYR349 GLN350 ALA351 CYS352 THR353 GLU354 ILE355 ASN356 LEU357 THR358 PHE359 ALA360 SER361 ASN362 ASN363 VAL364 THR365 ASP366 MET367 PHE368 PRO369 ASP370 LEU371 PRO372 PHE373 THR374 ASP375 GLU376 LEU377 ARG378 GLN379 ARG380 TYR381 CYS382 LEU383 ASP384 THR385 TRP386 GLY387 VAL388 TRP389 PRO390 ARG391 PRO392 ASP393 TRP394 LEU395 LEU396 THR397 SER398 PHE399 TRP400 GLY401 GLY402 ASP403 LEU404 ARG405 ALA406 ALA407 SER408 ASN409 ILE410 ILE411 PHE412 SER413 ASN414 GLY415 ASN416 LEU417 ASP418 PRO419 TRP420 ALA421 GLY422 GLY423 GLY424 ILE425 ARG426 ARG427 ASN428 LEU429 SER430 ALA431 SER432 VAL433 ILE434 ALA435 VAL436 THR437 ILE438 GLN439 GLY440 GLY441 ALA442 HIS443 HIS444 LEU445 ASP446 LEU447 ARG448 ALA449 SER450 HIS451 PRO452 GLU453 ASP454 PRO455 ALA456 SER457 VAL458 VAL459 GLU460 ALA461 ARG462 LYS463 LEU464 GLU465 ALA466 THR467 ILE468 ILE469 GLY470 GLU471 TRP472 VAL473 LYS474 ALA475 ALA476 ARG477
Ligands
Unit 5 NAG1 NAG2 BMA3
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2 BMA3
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2 BMA3
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2
Unit 13 NAG1 NAG495
Unit 14 NAG1
Unit 15 NAG494 NAG495
Unit 16 NAG1
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany