Chain 2 from PDB Type:RNA Length:112
3j0q 2 2194 GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG 2305
2203 2213 2223 2233 2243 2253 2263 2273 2283 2293 2303
Chain 3 from PDB Type:RNA Length:12
3j0q 3 2477 GCCAGUGAAAUA 2488
2486
Chain 7 from PDB Type:RNA Length:50
3j0q 7 2824 GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU 2873
2833 2843 2853 2863 2873
Chain 9 from PDB Type:RNA Length:19
3j0q 9 2668 UGGAGAACAGAAAUCUCCA 2686
2677
Chain B from PDB Type:PROTEIN Length:213
aligned with RL1A_YEAST | P0CX43 from UniProtKB/Swiss-Prot Length:217
Alignment length:213
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213
RL1A_YEAST 4 ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL 216
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....hhhhhh............................................................hhhhh...................hhhhhhhh......................hhhhhh............hhhhhh........................hhhhhhhhhhh.............................. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------RIBOSOMAL_L1 -------------------------------------------------------------------------------- PROSITE
Transcript 2 Exon 2.1 PDB: B:4-216 UniProt: 1-217 [INCOMPLETE] Transcript 2
3j0q B 4 ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL 216
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213
Chain G from PDB Type:RNA Length:13
3j0q G 1429 GCACGCGCGUUAC 1441
1438
Chain J from PDB Type:PROTEIN Length:208
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...............................................eeee....eeehhhhhhhhhhhhhhhhhhh................eeee..........eeeee.eee....ee.....hhhhhhhhhhhhhhhhhh.......ee..........hhhhhh......................hhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0q J 3 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA 221
12 22 32 42 52 62 72 82 92 113 123 133 143 153 163 173 183 193 203 213
101|
113
Chain L from PDB Type:PROTEIN Length:141
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhhhhhhhh..hhhhhhhhhhhhhhh......eeeeeeeeeeeee.......eeeeeeeee.....eeeee....hhhhh.....eeeeee...............eeeeee...hhhhhhh...... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0q L 2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEKR 142
11 21 31 41 51 61 71 81 91 101 111 121 131 141
Chain S from PDB Type:PROTEIN Length:125
SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........eee.......hhhhh..eeeee....eeeee.hhhhh..hhhhhh.......... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
3j0q S 11 FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGK 135
20 30 40 50 60 70 80 90 100 110 120 130
Chain W from PDB Type:RNA Length:77
3j0q W 1 CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA 76
10 |19 29 39 49 59 69
17A
Chain X from PDB Type:PROTEIN Length:68
SCOP domains -------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhh....................hhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------- Transcript
3j0q X 7 TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHAGKKEKMDAAA 74
16 26 36 46 56 66
Chain Y from PDB Type:RNA Length:77
3j0q Y 1 CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA 76
10 |19 29 39 49 59 69
17A
Chain a from PDB Type:RNA Length:48
3j0q a 541 GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA 588
550 560 570 580
Chain c from PDB Type:RNA Length:17
3j0q c 972 GACGAUCAGAUACCGUC 988
981
Chain d from PDB Type:RNA Length:7
3j0q d 1543 CGAGGAA 1549
Chain f from PDB Type:RNA Length:21
3j0q f 1236 GGUGGUGGUGCAUGGCCGUUC 1256
1245 1255
Chain g from PDB Type:RNA Length:31
3j0q g 1142 GAACCUGCGGCUUAAUUUGACUCAACACGGG 1172
1151 1161 1171
Chain h from PDB Type:RNA Length:111
3j0q h 1606 CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA 1716
1615 1625 1635 1645 1655 1665 1675 1685 1695 1705 1715
Chain k from PDB Type:PROTEIN Length:165
aligned with RL11B_YEAST | Q3E757 from UniProtKB/Swiss-Prot Length:174
Alignment length:165
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166
RL11B_YEAST 7 NPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADV 171
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......................hhhhhhhhhhhhhh.............................hhhhh..................hhhhh.......................................................hhhhhh........... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------RIBOSOMAL_L5 ---------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 Exon 1.1 PDB: k:7-171 UniProt: 1-174 [INCOMPLETE] Transcript 1
3j0q k 7 NPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADV 171
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166
Chain w from PDB Type:RNA Length:2
3j0q w 14 AA 15
Chain y from PDB Type:RNA Length:3
3j0q y 19 UUC 21
| Legend: |
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→ Mismatch |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
Description
