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Sequence, Chains, Asymmetric and Biological Units

Title CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FIT 10.6A CRYO-EM MAP: ROTATED PRE STATE 2
Keywords MAMMALIA, TRANSLATION, ELONGATION CYCLE, TRNA, RIBOSOME
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3J0Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    a 48 1029 0
2  RNA    c 17 362 0
3  RNA    d 7 155 0
4  RNA    g 31 660 0
5  RNA    G 13 276 0
6  RNA    f 21 452 0
7  RNA    h 111 2368 0
8  Protein   RIBOSOMAL PROTEIN S15  S 125 985 0
9  Protein   RIBOSOMAL PROTEIN S23  L 141 1097 0
10  Protein   RIBOSOMAL PROTEIN S30  X 68 554 0
11  RNA    2 112 2392 0
12  RNA    3 12 259 0
13  RNA    9 19 408 0
14  RNA    7 50 1054 0
15  Protein   RIBOSOMAL PROTEIN L10A  B 213 1055 0
16  Protein   RIBOSOMAL PROTEIN L10  J 208 1027 0
17  Protein   RIBOSOMAL PROTEIN L11  k 165 810 0
18  RNA    Y 77 1640 0
19  RNA    y 3 60 0
20  RNA    W 77 1640 0
21  RNA    w 2 44 0
total       1520 18327 0
Proteins
Unit 8 PHE11 THR12 PHE13 ARG14 GLY15 LYS16 GLY17 LEU18 GLU19 GLU20 LEU21 THR22 ALA23 LEU24 ALA25 SER26 GLY27 SER28 ASN29 SER30 GLU31 LYS32 LEU33 ILE34 SER35 ASP36 GLU37 LEU38 ALA39 ALA40 LEU41 PHE42 ASP43 ALA44 LYS45 THR46 ARG47 ARG48 ARG49 VAL50 LYS51 ARG52 GLY53 ILE54 SER55 GLU56 LYS57 TYR58 ALA59 LYS60 PHE61 VAL62 ASN63 LYS64 VAL65 ARG66 ARG67 SER68 LYS69 GLU70 LYS71 CYS72 PRO73 ALA74 GLY75 GLU76 LYS77 PRO78 VAL79 PRO80 VAL81 LYS82 THR83 HIS84 TYR85 ARG86 SER87 MET88 ILE89 VAL90 ILE91 PRO92 GLU93 LEU94 VAL95 GLY96 GLY97 ILE98 VAL99 GLY100 VAL101 TYR102 ASN103 GLY104 LYS105 GLU106 PHE107 VAL108 ASN109 VAL110 GLU111 VAL112 LYS113 PHE114 ASP115 MET116 ILE117 GLY118 LYS119 TYR120 LEU121 ALA122 GLU123 PHE124 ALA125 MET126 THR127 TYR128 LYS129 PRO130 THR131 THR132 HIS133 GLY134 LYS135
Unit 9 GLY2 VAL3 GLY4 LYS5 PRO6 ARG7 GLY8 ILE9 ARG10 ALA11 GLY12 ARG13 LYS14 LEU15 ALA16 ARG17 HIS18 ARG19 LYS20 ASP21 GLN22 ARG23 TRP24 ALA25 ASP26 ASN27 ASP28 PHE29 ASN30 LYS31 ARG32 LEU33 LEU34 GLY35 SER36 ARG37 TRP38 ARG39 ASN40 PRO41 PHE42 MET43 GLY44 ALA45 SER46 HIS47 ALA48 LYS49 GLY50 LEU51 VAL52 THR53 GLU54 LYS55 ILE56 GLY57 ILE58 GLU59 SER60 LYS61 GLN62 PRO63 ASN64 SER65 ALA66 VAL67 ARG68 LYS69 CYS70 VAL71 ARG72 VAL73 LEU74 LEU75 ARG76 LYS77 ASN78 SER79 LYS80 LYS81 ILE82 ALA83 ALA84 PHE85 VAL86 PRO87 MET88 ASP89 GLY90 CYS91 LEU92 ASN93 PHE94 LEU95 ALA96 GLU97 ASN98 ASP99 GLU100 VAL101 LEU102 VAL103 ALA104 GLY105 LEU106 GLY107 ARG108 GLN109 GLY110 HIS111 ALA112 VAL113 GLY114 ASP115 ILE116 PRO117 GLY118 VAL119 ARG120 PHE121 LYS122 VAL123 VAL124 CYS125 VAL126 LYS127 GLY128 ILE129 SER130 LEU131 LEU132 ALA133 LEU134 PHE135 LYS136 GLY137 LYS138 LYS139 GLU140 LYS141 ARG142
Unit 10 THR7 LEU8 ALA9 LYS10 ALA11 GLY12 LYS13 VAL14 ARG15 LYS16 GLN17 THR18 PRO19 LYS20 VAL21 GLU22 LYS23 LYS24 ASP25 LYS26 PRO27 ARG28 LYS29 THR30 PRO31 LYS32 GLY33 ARG34 SER35 TYR36 LYS37 ARG38 ILE39 LEU40 TYR41 ASN42 ARG43 ARG44 TYR45 ALA46 PRO47 HIS48 ILE49 LEU50 ALA51 THR52 ASP53 PRO54 LYS55 LYS56 ARG57 LYS58 SER59 PRO60 ASN61 TRP62 HIS63 ALA64 GLY65 LYS66 LYS67 GLU68 LYS69 MET70 ASP71 ALA72 ALA73 ALA74
Unit 15 ILE4 THR5 SER6 SER7 GLN8 VAL9 ARG10 GLU11 HIS12 VAL13 LYS14 GLU15 LEU16 LEU17 LYS18 TYR19 SER20 ASN21 GLU22 THR23 LYS24 LYS25 ARG26 ASN27 PHE28 LEU29 GLU30 THR31 VAL32 GLU33 LEU34 GLN35 VAL36 GLY37 LEU38 LYS39 ASN40 TYR41 ASP42 PRO43 GLN44 ARG45 ASP46 LYS47 ARG48 PHE49 SER50 GLY51 SER52 LEU53 LYS54 LEU55 PRO56 ASN57 CYS58 PRO59 ARG60 PRO61 ASN62 MET63 SER64 ILE65 CYS66 ILE67 PHE68 GLY69 ASP70 ALA71 PHE72 ASP73 VAL74 ASP75 ARG76 ALA77 LYS78 SER79 CYS80 GLY81 VAL82 ASP83 ALA84 MET85 SER86 VAL87 ASP88 ASP89 LEU90 LYS91 LYS92 LEU93 ASN94 LYS95 ASN96 LYS97 LYS98 LEU99 ILE100 LYS101 LYS102 LEU103 SER104 LYS105 LYS106 TYR107 ASN108 ALA109 PHE110 ILE111 ALA112 SER113 GLU114 VAL115 LEU116 ILE117 LYS118 GLN119 VAL120 PRO121 ARG122 LEU123 LEU124 GLY125 PRO126 GLN127 LEU128 SER129 LYS130 ALA131 GLY132 LYS133 PHE134 PRO135 THR136 PRO137 VAL138 SER139 HIS140 ASN141 ASP142 ASP143 LEU144 TYR145 GLY146 LYS147 VAL148 THR149 ASP150 VAL151 ARG152 SER153 THR154 ILE155 LYS156 PHE157 GLN158 LEU159 LYS160 LYS161 VAL162 LEU163 CYS164 LEU165 ALA166 VAL167 ALA168 VAL169 GLY170 ASN171 VAL172 GLU173 MET174 GLU175 GLU176 ASP177 VAL178 LEU179 VAL180 ASN181 GLN182 ILE183 LEU184 MET185 SER186 VAL187 ASN188 PHE189 PHE190 VAL191 SER192 LEU193 LEU194 LYS195 LYS196 ASN197 TRP198 GLN199 ASN200 VAL201 GLY202 SER203 LEU204 VAL205 VAL206 LYS207 SER208 SER209 MET210 GLY211 PRO212 ALA213 PHE214 ARG215 LEU216
Unit 16 ARG3 ARG4 PRO5 ALA6 ARG7 CYS8 TYR9 ARG10 TYR11 GLN12 LYS13 ASN14 LYS15 PRO16 TYR17 PRO18 LYS19 SER20 ARG21 TYR22 ASN23 ARG24 ALA25 VAL26 PRO27 ASP28 SER29 LYS30 ILE31 ARG32 ILE33 TYR34 ASP35 LEU36 GLY37 LYS38 LYS39 LYS40 ALA41 THR42 VAL43 ASP44 GLU45 PHE46 PRO47 LEU48 CYS49 VAL50 HIS51 LEU52 VAL53 SER54 ASN55 GLU56 LEU57 GLU58 GLN59 LEU60 SER61 SER62 GLU63 ALA64 LEU65 GLU66 ALA67 ALA68 ARG69 ILE70 CYS71 ALA72 ASN73 LYS74 TYR75 MET76 THR77 THR78 VAL79 SER80 GLY81 ARG82 ASP83 ALA84 PHE85 HIS86 LEU87 ARG88 VAL89 ARG90 VAL91 HIS92 PRO93 PHE94 HIS95 VAL96 LEU97 ARG98 ILE99 ASN100 LYS101 GLN113 GLY114 MET115 ARG116 GLY117 ALA118 TRP119 GLY120 LYS121 PRO122 HIS123 GLY124 LEU125 ALA126 ALA127 ARG128 VAL129 ASP130 ILE131 GLY132 GLN133 ILE134 ILE135 PHE136 SER137 VAL138 ARG139 THR140 LYS141 ASP142 SER143 ASN144 LYS145 ASP146 VAL147 VAL148 VAL149 GLU150 GLY151 LEU152 ARG153 ARG154 ALA155 ARG156 TYR157 LYS158 PHE159 PRO160 GLY161 GLN162 GLN163 LYS164 ILE165 ILE166 LEU167 SER168 LYS169 LYS170 TRP171 GLY172 PHE173 THR174 ASN175 LEU176 ASP177 ARG178 PRO179 GLU180 TYR181 LEU182 LYS183 LYS184 ARG185 GLU186 ALA187 GLY188 GLU189 VAL190 LYS191 ASP192 ASP193 GLY194 ALA195 PHE196 VAL197 LYS198 PHE199 LEU200 SER201 LYS202 LYS203 GLY204 SER205 LEU206 GLU207 ASN208 ASN209 ILE210 ARG211 GLU212 PHE213 PRO214 GLU215 TYR216 PHE217 ALA218 ALA219 GLN220 ALA221
Unit 17 ASN7 PRO8 MET9 ARG10 ASP11 LEU12 LYS13 ILE14 GLU15 LYS16 LEU17 VAL18 LEU19 ASN20 ILE21 SER22 VAL23 GLY24 GLU25 SER26 GLY27 ASP28 ARG29 LEU30 THR31 ARG32 ALA33 SER34 LYS35 VAL36 LEU37 GLU38 GLN39 LEU40 SER41 GLY42 GLN43 THR44 PRO45 VAL46 GLN47 SER48 LYS49 ALA50 ARG51 TYR52 THR53 VAL54 ARG55 THR56 PHE57 GLY58 ILE59 ARG60 ARG61 ASN62 GLU63 LYS64 ILE65 ALA66 VAL67 HIS68 VAL69 THR70 VAL71 ARG72 GLY73 PRO74 LYS75 ALA76 GLU77 GLU78 ILE79 LEU80 GLU81 ARG82 GLY83 LEU84 LYS85 VAL86 LYS87 GLU88 TYR89 GLN90 LEU91 ARG92 ASP93 ARG94 ASN95 PHE96 SER97 ALA98 THR99 GLY100 ASN101 PHE102 GLY103 PHE104 GLY105 ILE106 ASP107 GLU108 HIS109 ILE110 ASP111 LEU112 GLY113 ILE114 LYS115 TYR116 ASP117 PRO118 SER119 ILE120 GLY121 ILE122 PHE123 GLY124 MET125 ASP126 PHE127 TYR128 VAL129 VAL130 MET131 ASN132 ARG133 PRO134 GLY135 ALA136 ARG137 VAL138 THR139 ARG140 ARG141 LYS142 ARG143 CYS144 LYS145 GLY146 THR147 VAL148 GLY149 ASN150 SER151 HIS152 LYS153 THR154 THR155 LYS156 GLU157 ASP158 THR159 VAL160 SER161 TRP162 PHE163 LYS164 GLN165 LYS166 TYR167 ASP168 ALA169 ASP170 VAL171
Nucleic acids
Unit 1 G541 G542 A543 G544 G545 G546 C547 A548 A549 G550 U551 C552 A553 U554 G555 G556 U557 G558 C559 C560 A561 G562 C563 A564 G565 C566 C567 G568 C569 G570 G571 U572 A573 A574 U575 U576 C577 C578 A579 G580 C581 U582 C583 C584 A585 A586 U587 A588
Unit 2 G972 A973 C974 G975 A976 U977 C978 A979 G980 A981 U982 A983 C984 C985 G986 U987 C988
Unit 3 C1543 G1544 A1545 G1546 G1547 A1548 A1549
Unit 4 G1142 A1143 A1144 C1145 C1146 U1147 G1148 C1149 G1150 G1151 C1152 U1153 U1154 A1155 A1156 U1157 U1158 U1159 G1160 A1161 C1162 U1163 C1164 A1165 A1166 C1167 A1168 C1169 G1170 G1171 G1172
Unit 5 G1429 C1430 A1431 C1432 G1433 C1434 G1435 C1436 G1437 U1438 U1439 A1440 C1441
Unit 6 G1236 G1237 U1238 G1239 G1240 U1241 G1242 G1243 U1244 G1245 C1246 A1247 U1248 G1249 G1250 C1251 C1252 G1253 U1254 U1255 C1256
Unit 7 C1606 A1607 C1608 C1609 G1610 C1611 C1612 C1613 G1614 U1615 C1616 G1617 C1618 U1619 U1620 G1621 U1622 A1623 G1624 U1625 A1626 A1627 C1628 G1629 A1630 A1631 U1632 G1633 G1634 U1635 C1636 U1637 G1638 G1639 U1640 G1641 A1642 A1643 C1644 C1645 U1646 U1647 C1648 U1649 G1650 G1651 A1652 C1653 U1654 G1655 C1656 G1657 A1658 C1659 A1660 G1661 C1662 A1663 A1664 U1665 G1666 U1667 U1668 G1669 C1670 G1671 G1672 A1673 A1674 A1675 A1676 A1677 U1678 A1679 A1680 G1681 U1682 A1683 A1684 A1685 C1686 C1687 C1688 U1689 A1690 C1691 C1692 A1693 U1694 U1695 U1696 G1697 G1698 A1699 A1700 C1701 A1702 A1703 C1704 A1705 A1706 G1707 A1708 A1709 G1710 U1711 C1712 G1713 U1714 A1715 A1716
Unit 11 G2194 C2195 C2196 C2197 A2198 G2199 U2200 G2201 C2202 U2203 C2204 U2205 G2206 A2207 A2208 U2209 G2210 U2211 C2212 A2213 A2214 A2215 G2216 U2217 G2218 A2219 A2220 G2221 A2222 A2223 A2224 U2225 U2226 C2227 A2228 A2229 C2230 C2231 A2232 A2233 G2234 C2235 G2236 C2237 G2238 G2239 G2240 U2241 A2242 A2243 A2244 C2245 G2246 G2247 C2248 G2249 G2250 G2251 A2252 G2253 U2254 A2255 A2256 C2257 U2258 A2259 U2260 G2261 A2262 C2263 U2264 C2265 U2266 C2267 U2268 U2269 A2270 A2271 G2272 G2273 U2274 A2275 G2276 C2277 C2278 A2279 A2280 A2281 U2282 G2283 C2284 C2285 U2286 C2287 G2288 U2289 C2290 A2291 U2292 C2293 U2294 A2295 A2296 U2297 U2298 A2299 G2300 U2301 G2302 A2303 C2304 G2305
Unit 12 G2477 C2478 C2479 A2480 G2481 U2482 G2483 A2484 A2485 A2486 U2487 A2488
Unit 13 U2668 G2669 G2670 A2671 G2672 A2673 A2674 C2675 A2676 G2677 A2678 A2679 A2680 U2681 C2682 U2683 C2684 C2685 A2686
Unit 14 G2824 C2825 U2826 U2827 G2828 U2829 G2830 G2831 C2832 A2833 G2834 U2835 C2836 A2837 A2838 G2839 C2840 G2841 U2842 U2843 C2844 A2845 U2846 A2847 G2848 C2849 G2850 A2851 C2852 A2853 U2854 U2855 G2856 C2857 U2858 U2859 U2860 U2861 U2862 G2863 A2864 U2865 U2866 C2867 U2868 U2869 C2870 G2871 A2872 U2873
Unit 18 C1 G2 C3 G4 G5 G6 G7 U8 G9 G10 A11 G12 C13 A14 G15 C16 C17 U17A G18 G19 U20 A21 G22 C23 U24 C25 G26 U27 C28 G29 G30 G31 C32 U33 C34 A35 U36 A37 A38 C39 C40 C41 G42 A43 A44 G45 G46 U47 C48 G49 U50 C51 G52 G53 U54 U55 C56 A57 A58 A59 U60 C61 C62 G63 G64 C65 C66 C67 C68 C69 G70 C71 A72 A73 C74 C75 A76
Unit 19 U19 U20 C21
Unit 20 C1 G2 C3 G4 G5 G6 G7 U8 G9 G10 A11 G12 C13 A14 G15 C16 C17 U17A G18 G19 U20 A21 G22 C23 U24 C25 G26 U27 C28 G29 G30 G31 C32 U33 C34 A35 U36 A37 A38 C39 C40 C41 G42 A43 A44 G45 G46 U47 C48 G49 U50 C51 G52 G53 U54 U55 C56 A57 A58 A59 U60 C61 C62 G63 G64 C65 C66 C67 C68 C69 G70 C71 A72 A73 C74 C75 A76
Unit 21 A14 A15
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany