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(-)Asym./Biol. Unit
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(-) Description

Title :  CORE OF MAMMALIAN 80S PRE-RIBOSOME IN COMPLEX WITH TRNAS FITTED TO A 9.8A CRYO-EM MAP: CLASSIC PRE STATE 1
 
Authors :  T. Budkevich, J. Giesebrecht, R. Altman, J. Munro, T. Mielke, K. Nierha S. Blanchard, C. M. Spahn
Date :  04 Oct 11  (Deposition) - 16 Nov 11  (Release) - 16 Nov 11  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  9.80
Chains :  Asym./Biol. Unit :  B,E,F,G,J,K,L,S,T,V,W,X,Y,a,b,c,d,e,f,g,h,v,w,y,1,2,3,4,5,6,7,8
Keywords :  Mammalia, Translation, Elongation Cycle, Trna, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Budkevich, J. Giesebrecht, R. B. Altman, J. B. Munro, T. Mielke, K. H. Nierhaus, S. C. Blanchard, C. M. Spahn
Structure And Dynamics Of The Mammalian Ribosomal Pretranslocation Complex.
Mol. Cell V. 44 214 2011
PubMed-ID: 22017870  |  Reference-DOI: 10.1016/J.MOLCEL.2011.07.040

(-) Compounds

Molecule 1 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsa
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 2 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsb
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 3 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsc
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 4 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsd
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 5 - 40S RIBOSOMAL RNA FRAGMENT
    Chainse
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 6 - 40S RIBOSOMAL RNA FRAGMENT
    ChainsE
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 7 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsf
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 8 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsg
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 9 - 40S RIBOSOMAL RNA FRAGMENT
    ChainsG
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 10 - 40S RIBOSOMAL RNA FRAGMENT
    Chainsh
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 11 - RIBOSOMAL PROTEIN S5
    ChainsT
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 12 - RIBOSOMAL PROTEIN S14
    ChainsK
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 13 - RIBOSOMAL PROTEIN S23
    ChainsL
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 14 - RIBOSOMAL PROTEIN S30
    ChainsX
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 15 - RIBOSOMAL PROTEIN S15
    ChainsS
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 16 - 60S RIBOSOMAL RNA FRAGMENT
    Chains1
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 17 - 60S RIBOSOMAL RNA FRAGMENT
    Chains2
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 18 - 60S RIBOSOMAL RNA FRAGMENT
    Chains3
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 19 - 60S RIBOSOMAL RNA FRAGMENT
    Chains4
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 20 - 60S RIBOSOMAL RNA FRAGMENT
    Chains5
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 21 - 60S RIBOSOMAL RNA FRAGMENT
    Chains6
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 22 - 60S RIBOSOMAL RNA FRAGMENT
    Chains7
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 23 - 60S RIBOSOMAL RNA FRAGMENT
    Chains8
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 24 - RIBOSOMAL PROTEIN L10A
    ChainsB
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 25 - RIBOSOMAL PROTEIN L10
    ChainsJ
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 26 - RIBOSOMAL PROTEIN L36A
    ChainsF
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 27 - TRNA
    ChainsY, V, W
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 28 - MRNA FRAGMENT
    Chainsy, v
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER
 
Molecule 29 - MRNA FRAGMENT
    Chainsw
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    TissueLIVER

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526272829303132
Asymmetric/Biological Unit BEFGJKLSTVWXYabcdefghvwy12345678

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3J0L)

(-) Sites  (0, 0)

(no "Site" information available for 3J0L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J0L)

(-) Cis Peptide Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1Leu B:53 -Lys B:54
2Lys B:54 -Leu B:55
3Thr B:154 -Ile B:155
4Ile B:155 -Lys B:156
5Gly J:161 -Gln J:162
6Lys J:170 -Trp J:171
7Asn J:175 -Leu J:176
8Asp J:177 -Arg J:178
9Lys J:191 -Asp J:192
10Lys J:203 -Gly J:204
11Ser J:205 -Leu J:206
12Gly F:14 -Lys F:15
13Gln F:47 -Ser F:48
14Val F:57 -Phe F:58
15Thr F:79 -Arg F:80
16Lys F:89 -His F:90
17Gly F:95 -Glu F:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J0L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J0L)

(-) Exons   (0, 0)

(no "Exon" information available for 3J0L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain 1 from PDB  Type:RNA  Length:50
                                                                                   
                3j0l 1 1001 GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU 1050
                                  1010      1020      1030      1040      1050

Chain 2 from PDB  Type:RNA  Length:112
                                                                                                                                                 
                3j0l 2 2194 GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG 2305
                                  2203      2213      2223      2233      2243      2253      2263      2273      2283      2293      2303  

Chain 3 from PDB  Type:RNA  Length:12
                                             
                3j0l 3 2477 GCCAGUGAAAUA 2488
                                  2486  

Chain 4 from PDB  Type:RNA  Length:14
                                               
                3j0l 4 2614 GGCUGGGGCGGCAC 2627
                                  2623    

Chain 5 from PDB  Type:RNA  Length:6
                                       
                3j0l 5 2653 CCUAAG 2658

Chain 6 from PDB  Type:RNA  Length:19
                                                    
                3j0l 6 2689 AGAACAAAAGGGUAAAAGC 2707
                                  2698         

Chain 7 from PDB  Type:RNA  Length:50
                                                                                   
                3j0l 7 2824 GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU 2873
                                  2833      2843      2853      2863      2873

Chain 8 from PDB  Type:RNA  Length:20
                                                     
                3j0l 8 2957 GACCGUCGUGAGACAGGUUA 2976
                                  2966      2976

Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh............................................................hhhhh...................hhhhhhhh......................hhhhhh............hhhhhh........................hhhhhhhhhhh.............................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j0l B    4 ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL  216
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   

Chain E from PDB  Type:RNA  Length:5
                                      
                3j0l E 1589 UCCCU 1593

Chain F from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................ee.........hhhhhhhh.........................ee......................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                3j0l F    2 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGE   96
                                    11        21        31        41        51        61        71        81        91     

Chain G from PDB  Type:RNA  Length:13
                                              
                3j0l G 1429 GCACGCGCGUUAC 1441
                                  1438   

Chain J from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............................................eeee....eeehhhhhhhhhhhhhhhhhhh................eeee..........eeeee.eee....ee.....hhhhhhhhhhhhhhhhhh.......ee..........hhhhhh......................hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j0l J    3 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA  221
                                    12        22        32        42        52        62        72        82        92       113       123       133       143       153       163       173       183       193       203       213        
                                                                                                                            101|                                                                                                            
                                                                                                                             113                                                                                                            

Chain K from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeee........eee......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhh..eeeeeee.................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j0l K   12 EVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL  151
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151

Chain L from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.......eeeeeeeeeeee.......eeeeeeeee.....eeeee....hhhhh.....eeeeee...............eeeeee...hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j0l L    2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEKR  142
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 

Chain S from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........eee.......hhhhh..eeeee....eeeee.hhhhh..hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                3j0l S   11 FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGK  135
                                    20        30        40        50        60        70        80        90       100       110       120       130     

Chain T from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh.hhhhh.................................hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3j0l T    9 TQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR  200
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198  

Chain V from PDB  Type:RNA  Length:75
                                                                                                            
                3j0l V    1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACC   75
                                    10        20        30        40        50        60        70     

Chain W from PDB  Type:RNA  Length:76
                                                                                                             
                3j0l W    1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA   76
                                    10        20        30        40        50        60        70      

Chain X from PDB  Type:PROTEIN  Length:68
                                                                                                     
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhh....................hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                3j0l X    7 TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHAGKKEKMDAAA   74
                                    16        26        36        46        56        66        

Chain Y from PDB  Type:RNA  Length:75
                                                                                                            
                3j0l Y    1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACC   75
                                    10        20        30        40        50        60        70     

Chain a from PDB  Type:RNA  Length:48
                                                                                 
                3j0l a  541 GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA  588
                                   550       560       570       580        

Chain b from PDB  Type:RNA  Length:12
                                             
                3j0l b  877 GAGGUGAAAUUC  888
                                   886  

Chain c from PDB  Type:RNA  Length:17
                                                  
                3j0l c  972 GACGAUCAGAUACCGUC  988
                                   981       

Chain d from PDB  Type:RNA  Length:7
                                        
                3j0l d 1543 CGAGGAA 1549

Chain e from PDB  Type:RNA  Length:4
                                     
                3j0l e 1132 ACCA 1135

Chain f from PDB  Type:RNA  Length:21
                                                      
                3j0l f 1236 GGUGGUGGUGCAUGGCCGUUC 1256
                                  1245||||  1255 
                                   1246|||       
                                    3247||       
                                     3248|       
                                      1249       

Chain g from PDB  Type:RNA  Length:31
                                                                
                3j0l g 1142 GAACCUGCGGCUUAAUUUGACUCAACACGGG 1172
                                  1151      1161      1171 

Chain h from PDB  Type:RNA  Length:111
                                                                                                                                                
                3j0l h 1606 CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA 1716
                                  1615      1625      1635      1645      1655      1665      1675      1685      1695      1705      1715 

Chain v from PDB  Type:RNA  Length:3
                                    
                3j0l v   16 UUC   18

Chain w from PDB  Type:RNA  Length:2
                                   
                3j0l w   14 AA   15

Chain y from PDB  Type:RNA  Length:3
                                    
                3j0l y   19 UUC   21

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J0L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J0L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J0L)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3J0L)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 3j0l)
 
  Cis Peptide Bonds
    Asn J:175 - Leu J:176   [ RasMol ]  
    Asp J:177 - Arg J:178   [ RasMol ]  
    Gln F:47 - Ser F:48   [ RasMol ]  
    Gly F:14 - Lys F:15   [ RasMol ]  
    Gly F:95 - Glu F:96   [ RasMol ]  
    Gly J:161 - Gln J:162   [ RasMol ]  
    Ile B:155 - Lys B:156   [ RasMol ]  
    Leu B:53 - Lys B:54   [ RasMol ]  
    Lys B:54 - Leu B:55   [ RasMol ]  
    Lys F:89 - His F:90   [ RasMol ]  
    Lys J:170 - Trp J:171   [ RasMol ]  
    Lys J:191 - Asp J:192   [ RasMol ]  
    Lys J:203 - Gly J:204   [ RasMol ]  
    Ser J:205 - Leu J:206   [ RasMol ]  
    Thr B:154 - Ile B:155   [ RasMol ]  
    Thr F:79 - Arg F:80   [ RasMol ]  
    Val F:57 - Phe F:58   [ RasMol ]  
 

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 Databases and Analysis Tools

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  3j0l
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3j0o 80S PRE-RIBOSOME CLASSIC PRE STATE 2
3j0p 80S PRE-RIBOSOME ROTATED PRE STATE 1
3j0q 80S PRE-RIBOSOME ROTATED PRE STATE 2