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3INB
Asym. Unit
Info
Asym.Unit (377 KB)
Biol.Unit 1 (368 KB)
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(1)
Title
:
STRUCTURE OF THE MEASLES VIRUS HEMAGGLUTININ BOUND TO THE CD46 RECEPTOR
Authors
:
C. Santiago, M. L. Celma, T. Stehle, J. M. Casasnovas
Date
:
12 Aug 09 (Deposition) - 22 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Measles, Beta Propeller, Envelope Protein, Hemagglutinin, Viral Protein. Membrane Cofactor Protein, Mcp, Cd46, Virus Receptor Complex, Scr, Complement Control Protein, Immune System Complex, Membrane, Transmembrane, Virion, Cell Membrane, Glycoprotein, Host- Virus Interaction, Signal-Anchor, Complement Pathway, Disease Mutation, Disulfide Bond, Fertilization, Immune Response, Innate Immunity, Phosphoprotein, Sushi, Viral Protein, Immune System, Viral Protein-Immune System Complex
(Keyword Search:
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Reference
:
C. Santiago, M. L. Celma, T. Stehle, J. M. Casasnovas
Structure Of The Measles Virus Hemagglutinin Bound To The Cd46 Receptor
Nat. Struct. Mol. Biol. V. 17 124 2010
[
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:199 , ASN A:200 , ARG B:212
BINDING SITE FOR RESIDUE NAG A 1200
2
AC2
SOFTWARE
ASN A:215 , SER A:217 , GLU A:235 , ASP A:283 , GLY A:592 , HIS A:593
BINDING SITE FOR RESIDUE NAG A 1215
3
AC3
SOFTWARE
LYS A:328 , HOH A:618 , ARG B:261
BINDING SITE FOR RESIDUE SO4 A 3
4
AC4
SOFTWARE
ASN B:200
BINDING SITE FOR RESIDUE NAG B 1200
5
AC5
SOFTWARE
ASN B:215 , SER B:217 , GLU B:235 , ASP B:283
BINDING SITE FOR RESIDUE NAG B 1215
6
AC6
SOFTWARE
ARG A:261 , SO4 B:2 , LYS B:328
BINDING SITE FOR RESIDUE SO4 B 1
7
AC7
SOFTWARE
ARG A:261 , SO4 B:1 , TYR B:275 , GLU B:277
BINDING SITE FOR RESIDUE SO4 B 2
8
AC8
SOFTWARE
LYS B:488 , ASN C:80 , GLN C:88
BINDING SITE FOR RESIDUE NAG C 1080
9
AC9
SOFTWARE
LYS A:488 , ASN D:80 , GLN D:88
BINDING SITE FOR RESIDUE NAG D 1080
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_063656 (C1Y, chain C/D, )
2: VAR_026568 (R25Q, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063656
C
35
Y
MCP_HUMAN
Disease (AHUS2)
---
C/D
C
1
Y
2
UniProt
VAR_026568
R
59
Q
MCP_HUMAN
Polymorphism
---
C/D
R
25
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|C:63-125,D:63-125|C:126-126,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
MCP_HUMAN
33-96
97-159
160-225
226-285
4
-
C:63-125
D:63-125
C:126-126
D:126-126
-
[
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Exons
(4, 8)
Info
All Exons
Exon 1.2 (C:1-62 | D:1-62)
Exon 1.3 (C:62-96 | D:62-96)
Exon 1.4a (C:96-125 | D:96-125)
Exon 1.4d (C:125-126 | D:125-126)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4a
4: Boundary 1.4a/1.4d
5: Boundary 1.4d/1.5b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358170
1a
ENSE00001225216
chr1:
207925402-207925654
253
MCP_HUMAN
1-33
33
0
-
-
1.2
ENST00000358170
2
ENSE00001600549
chr1:
207930359-207930547
189
MCP_HUMAN
33-96
64
2
C:1-62
D:1-62
62
62
1.3
ENST00000358170
3
ENSE00001725236
chr1:
207930885-207930987
103
MCP_HUMAN
96-130
35
2
C:62-96
D:62-96
35
35
1.4a
ENST00000358170
4a
ENSE00001719360
chr1:
207932984-207933069
86
MCP_HUMAN
130-159
30
2
C:96-125
D:96-125
30
30
1.4d
ENST00000358170
4d
ENSE00001167611
chr1:
207934594-207934791
198
MCP_HUMAN
159-225
67
2
C:125-126
D:125-126
2
2
1.5b
ENST00000358170
5b
ENSE00001167601
chr1:
207940358-207940540
183
MCP_HUMAN
225-286
62
0
-
-
1.5e
ENST00000358170
5e
ENSE00001320886
chr1:
207940952-207940996
45
MCP_HUMAN
286-301
16
0
-
-
1.5f
ENST00000358170
5f
ENSE00000792032
chr1:
207941124-207941168
45
MCP_HUMAN
301-316
16
0
-
-
1.5j
ENST00000358170
5j
ENSE00001167583
chr1:
207943666-207943707
42
MCP_HUMAN
316-330
15
0
-
-
1.6a
ENST00000358170
6a
ENSE00001167577
chr1:
207956637-207956675
39
MCP_HUMAN
330-343
14
0
-
-
1.7
ENST00000358170
7
ENSE00001167569
chr1:
207958416-207958451
36
MCP_HUMAN
343-355
13
0
-
-
1.8a
ENST00000358170
8a
ENSE00001167565
chr1:
207958964-207959027
64
MCP_HUMAN
355-376
22
0
-
-
1.9b
ENST00000358170
9b
ENSE00001162717
chr1:
207963598-207963690
93
MCP_HUMAN
376-392
17
0
-
-
1.10e
ENST00000358170
10e
ENSE00001643557
chr1:
207966864-207968858
1995
MCP_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3inbc1 (C:1-62)
1b: SCOP_d3inbd1 (D:1-62)
1c: SCOP_d3inbd2 (D:63-126)
1d: SCOP_d3inbc2 (C:63-126)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d3inbc1
C:1-62
1b
d3inbd1
D:1-62
1c
d3inbd2
D:63-126
1d
d3inbc2
C:63-126
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3inbC01 (C:1-62)
1b: CATH_3inbD01 (D:1-62)
1c: CATH_3inbC02 (C:63-126)
1d: CATH_3inbD02 (D:63-126)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Measles virus strain edmonston
(1)
1a
3inbC01
C:1-62
1b
3inbD01
D:1-62
1c
3inbC02
C:63-126
1d
3inbD02
D:63-126
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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Chain D
Asymmetric Unit 1
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