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(-) Description

Title :  1.5 ANGSTROM CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE FROM VIBRIO CHOLERAE.
 
Authors :  G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papa W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  21 May 09  (Deposition) - 16 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Glucose-6-Phosphate Isomerase, Pgi, Idp01329, Gluconeogenesis, Glycolysis, Isomerase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 5 Angstrom Crystal Structure Of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
    Chains: A, B, C, D
    EC Number: 5.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PGI, VC_0374
    Mutation: YES
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: O1 BIOVAR EL TOR STR. N16961
    Synonym: GPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 44)

Asymmetric Unit (5, 44)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2CL26Ligand/IonCHLORIDE ION
3NA2Ligand/IonSODIUM ION
4PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
5PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (44, 44)

Asymmetric Unit (44, 44)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:62 , HOH A:812 , HOH A:921 , HOH A:2078 , HOH A:2216 , HOH A:3413 , HOH C:2469BINDING SITE FOR RESIDUE CA A 551
02AC2SOFTWAREGLU A:168 , HOH A:1387 , HOH A:2765 , HOH A:2918 , HOH A:3926BINDING SITE FOR RESIDUE CA A 552
03AC3SOFTWAREGLU A:253 , HOH A:3373 , HOH A:3833 , HOH A:3984 , HOH A:4115BINDING SITE FOR RESIDUE CA A 553
04AC4SOFTWAREGLU A:332 , HOH A:3970 , GLY B:330 , CA B:552 , HOH B:4111 , HOH B:4114BINDING SITE FOR RESIDUE CA A 554
05AC5SOFTWAREARG A:95 , ALA A:96 , HOH A:1640 , HOH A:2031BINDING SITE FOR RESIDUE CL A 555
06AC6SOFTWAREASN A:327 , TYR A:371 , GLN A:372 , HOH A:1459 , HOH A:1928BINDING SITE FOR RESIDUE CL A 556
07AC7SOFTWARELYS A:127 , MET A:261 , GLU A:263 , HOH A:1040BINDING SITE FOR RESIDUE CL A 557
08AC8SOFTWAREGLN A:419 , HOH A:598 , ARG B:549BINDING SITE FOR RESIDUE CL A 558
09AC9SOFTWAREASN A:175 , GLY A:287 , HOH A:1053 , HOH A:1302BINDING SITE FOR RESIDUE CL A 559
10BC1SOFTWAREMET A:26 , ASP A:27 , HOH A:2211 , HOH A:2711BINDING SITE FOR RESIDUE CL A 560
11BC2SOFTWAREALA A:452 , HOH A:2855BINDING SITE FOR RESIDUE CL A 561
12BC3SOFTWAREGLN A:24 , ASP A:25 , GLY A:396 , THR A:397 , LYS A:398 , LEU A:399 , ASN A:467 , ARG A:468 , HOH A:2008 , HOH A:2467 , HOH A:2504 , HOH A:3493 , PEG B:561BINDING SITE FOR RESIDUE PG4 A 562
13BC4SOFTWAREGLU B:62 , HOH B:638 , HOH B:651 , HOH B:1182BINDING SITE FOR RESIDUE CA B 551
14BC5SOFTWAREGLY A:330 , CA A:554 , HOH A:3970 , HOH A:3971 , GLU B:332 , HOH B:4111BINDING SITE FOR RESIDUE CA B 552
15BC6SOFTWAREARG B:95 , ALA B:96 , TRP B:267 , HOH B:1188 , HOH B:1869BINDING SITE FOR RESIDUE CL B 553
16BC7SOFTWAREASN B:175 , GLY B:287 , HOH B:731 , HOH B:1657BINDING SITE FOR RESIDUE CL B 554
17BC8SOFTWAREASN B:327 , TYR B:371 , GLN B:372 , HOH B:2282BINDING SITE FOR RESIDUE CL B 555
18BC9SOFTWAREASP B:266 , HOH B:1729 , HOH B:1869 , HOH B:3152 , HOH B:3651BINDING SITE FOR RESIDUE CL B 556
19CC1SOFTWAREASN B:104 , ASN B:107 , MET B:118 , ASN B:122 , HOH B:596 , HOH B:3987BINDING SITE FOR RESIDUE CL B 557
20CC2SOFTWARELYS B:72 , LEU B:76 , GLN B:77 , PHE B:310 , HOH B:1482 , HOH B:2632BINDING SITE FOR RESIDUE CL B 558
21CC3SOFTWAREPHE A:32 , HOH A:890 , ASP B:535 , SER B:536 , HOH B:658 , HOH B:1354BINDING SITE FOR RESIDUE CL B 559
22CC4SOFTWAREHOH B:720 , HOH B:1465 , HOH B:1875 , HOH B:2002 , HOH B:3986BINDING SITE FOR RESIDUE NA B 560
23CC5SOFTWAREPG4 A:562 , TYR B:371 , GLN B:372 , HOH B:1094BINDING SITE FOR RESIDUE PEG B 561
24CC6SOFTWAREGLU C:62 , HOH C:617 , HOH C:734 , HOH C:1246BINDING SITE FOR RESIDUE CA C 551
25CC7SOFTWAREARG C:95 , ALA C:96 , TRP C:267 , HOH C:1993BINDING SITE FOR RESIDUE CL C 552
26CC8SOFTWAREASN C:175 , GLY C:287 , HOH C:636BINDING SITE FOR RESIDUE CL C 553
27CC9SOFTWAREARG C:549 , GLN D:419 , HOH D:580 , HOH D:714BINDING SITE FOR RESIDUE CL C 554
28DC1SOFTWAREASN C:327 , TYR C:371 , GLN C:372 , HOH C:1846BINDING SITE FOR RESIDUE CL C 555
29DC2SOFTWARESER C:410 , ASN C:412 , HOH C:624 , HOH C:1255 , GLY D:187BINDING SITE FOR RESIDUE CL C 556
30DC3SOFTWAREHOH C:651 , HOH C:1214 , HOH C:1811 , HOH C:3215 , HOH C:3913BINDING SITE FOR RESIDUE NA C 557
31DC4SOFTWAREARG B:105 , SER B:106 , ASN B:107 , LYS C:450 , HOH C:1379 , HOH C:2803BINDING SITE FOR RESIDUE PEG C 558
32DC5SOFTWAREALA B:448 , LYS B:450 , HOH B:1842 , ARG C:105 , SER C:106 , ASN C:107 , HOH C:1326 , HOH C:2774 , HOH C:2888 , HOH C:3994BINDING SITE FOR RESIDUE PEG C 559
33DC6SOFTWAREVAL C:369 , TYR C:371 , GLN C:372 , HOH C:818 , THR D:397 , PG4 D:561BINDING SITE FOR RESIDUE PEG C 560
34DC7SOFTWAREHOH B:2124 , GLU D:62 , HOH D:811 , HOH D:830 , HOH D:2011 , HOH D:2302BINDING SITE FOR RESIDUE CA D 551
35DC8SOFTWAREGLU D:168 , HOH D:1444 , HOH D:1506 , HOH D:2839 , HOH D:3927 , HOH D:3928BINDING SITE FOR RESIDUE CA D 552
36DC9SOFTWAREGLU D:253 , HOH D:2802 , HOH D:3337 , HOH D:3881 , HOH D:3930 , HOH D:3985BINDING SITE FOR RESIDUE CA D 553
37EC1SOFTWAREARG D:95 , ALA D:96 , HOH D:1885 , HOH D:2032BINDING SITE FOR RESIDUE CL D 554
38EC2SOFTWAREASN D:327 , TYR D:371 , GLN D:372 , HOH D:1477 , HOH D:1656BINDING SITE FOR RESIDUE CL D 555
39EC3SOFTWAREASN D:175 , GLY D:287 , HOH D:1031 , HOH D:1418 , HOH D:3873BINDING SITE FOR RESIDUE CL D 556
40EC4SOFTWARELYS D:127 , MET D:261 , GLU D:263BINDING SITE FOR RESIDUE CL D 557
41EC5SOFTWAREMET D:26 , ASP D:27 , HOH D:2120 , HOH D:3226 , HOH D:3709BINDING SITE FOR RESIDUE CL D 558
42EC6SOFTWAREILE D:89 , PHE D:506 , HOH D:565 , HOH D:574BINDING SITE FOR RESIDUE CL D 559
43EC7SOFTWAREALA D:452 , HOH D:2046BINDING SITE FOR RESIDUE CL D 560
44EC8SOFTWAREPEG C:560 , GLN D:24 , GLY D:396 , THR D:397 , LEU D:399 , ASN D:467 , ARG D:468 , HOH D:1814 , HOH D:1882 , HOH D:2122 , HOH D:2505 , HOH D:3887BINDING SITE FOR RESIDUE PG4 D 561

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HJB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:382 -Thr A:383
2Gly B:382 -Thr B:383
3Gly C:382 -Thr C:383
4Gly D:382 -Thr D:383

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HJB)

(-) PROSITE Motifs  (3, 12)

Asymmetric Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_VIBCH10-548
 
 
 		  4A:10-548
B:10-548
C:10-548
D:10-548
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_VIBCH266-279
 
 
 		  4A:266-279
B:266-279
C:266-279
D:266-279
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_VIBCH498-515
 
 
 		  4A:498-515
B:498-515
C:498-515
D:498-515
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_VIBCH10-548
 
 
 		  2A:10-548
B:10-548
-
-
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_VIBCH266-279
 
 
 		  2A:266-279
B:266-279
-
-
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_VIBCH498-515
 
 
 		  2A:498-515
B:498-515
-
-
Biological Unit 2 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_VIBCH10-548
 
 
 		  2-
-
C:10-548
D:10-548
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_VIBCH266-279
 
 
 		  2-
-
C:266-279
D:266-279
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_VIBCH498-515
 
 
 		  2-
-
C:498-515
D:498-515

(-) Exons   (0, 0)

(no "Exon" information available for 3HJB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:551
 aligned with G6PI_VIBCH | Q9KUY4 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           G6PI_VIBCH     - -MLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
               SCOP domains d3hjba_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3hjbA01 A:0-98,A:293-511 Glucose-6-phosphate isomerase like protein; domain 1                      3hjbA02 A:99-292 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             3hjbA01 A:0-98,A:293-511 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                              3hjbA03 A:512-550                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhheeee...eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhh.hhh.ee......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee......hhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------P_GLUCOSE_ISOMERASE_3  PDB: A:10-548 UniProt: 10-548                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hjb A   0 AMLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 


Chain B from PDB  Type:PROTEIN  Length:551
 aligned with G6PI_VIBCH | Q9KUY4 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           G6PI_VIBCH     - -MLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
               SCOP domains d3hjbb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3hjbB01 B:0-98,B:293-511 Glucose-6-phosphate isomerase like protein; domain 1                      3hjbB02 B:99-292 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             3hjbB01 B:0-98,B:293-511 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                              3hjbB03 B:512-550                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhheeee...eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhh.hhh.ee......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee......hhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------P_GLUCOSE_ISOMERASE_3  PDB: B:10-548 UniProt: 10-548                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hjb B   0 AMLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 


Chain C from PDB  Type:PROTEIN  Length:551
 aligned with G6PI_VIBCH | Q9KUY4 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           G6PI_VIBCH     - -MLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
               SCOP domains d3hjbc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3hjbC01 C:0-98,C:293-511 Glucose-6-phosphate isomerase like protein; domain 1                      3hjbC02 C:99-292 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             3hjbC01 C:0-98,C:293-511 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                              3hjbC03 C:512-550                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhheeee...eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhh.hhh.ee......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee......hhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------P_GLUCOSE_ISOMERASE_3  PDB: C:10-548 UniProt: 10-548                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hjb C   0 AMLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 


Chain D from PDB  Type:PROTEIN  Length:551
 aligned with G6PI_VIBCH | Q9KUY4 from UniProtKB/Swiss-Prot  Length:550

    Alignment length:551
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549 
           G6PI_VIBCH     - -MLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTMHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
               SCOP domains d3hjbd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3hjbD01 D:0-98,D:293-511 Glucose-6-phosphate isomerase like protein; domain 1                      3hjbD02 D:99-292 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                             3hjbD01 D:0-98,D:293-511 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                              3hjbD03 D:512-550                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhheeee...eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhh.hhh.ee......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee......hhhhhhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------P_GLUCOSE_ISOMERASE_3  PDB: D:10-548 UniProt: 10-548                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       -- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hjb D   0 AMLKNINPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYVDRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGDHHQKLMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITPRTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNGLINAFKAFRA 550
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HJB)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (G6PI_VIBCH | Q9KUY4)
molecular function
    GO:0004347    glucose-6-phosphate isomerase activity    Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3hjb
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 Related Entries

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