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3HJB
Asym. Unit
Info
Asym.Unit (469 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (228 KB)
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(1)
Title
:
1.5 ANGSTROM CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE FROM VIBRIO CHOLERAE.
Authors
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papa W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
21 May 09 (Deposition) - 16 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Glucose-6-Phosphate Isomerase, Pgi, Idp01329, Gluconeogenesis, Glycolysis, Isomerase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 5 Angstrom Crystal Structure Of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.
To Be Published
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Hetero Components
(5, 44)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
CL
26
Ligand/Ion
CHLORIDE ION
3
NA
2
Ligand/Ion
SODIUM ION
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:62 , HOH A:812 , HOH A:921 , HOH A:2078 , HOH A:2216 , HOH A:3413 , HOH C:2469
BINDING SITE FOR RESIDUE CA A 551
02
AC2
SOFTWARE
GLU A:168 , HOH A:1387 , HOH A:2765 , HOH A:2918 , HOH A:3926
BINDING SITE FOR RESIDUE CA A 552
03
AC3
SOFTWARE
GLU A:253 , HOH A:3373 , HOH A:3833 , HOH A:3984 , HOH A:4115
BINDING SITE FOR RESIDUE CA A 553
04
AC4
SOFTWARE
GLU A:332 , HOH A:3970 , GLY B:330 , CA B:552 , HOH B:4111 , HOH B:4114
BINDING SITE FOR RESIDUE CA A 554
05
AC5
SOFTWARE
ARG A:95 , ALA A:96 , HOH A:1640 , HOH A:2031
BINDING SITE FOR RESIDUE CL A 555
06
AC6
SOFTWARE
ASN A:327 , TYR A:371 , GLN A:372 , HOH A:1459 , HOH A:1928
BINDING SITE FOR RESIDUE CL A 556
07
AC7
SOFTWARE
LYS A:127 , MET A:261 , GLU A:263 , HOH A:1040
BINDING SITE FOR RESIDUE CL A 557
08
AC8
SOFTWARE
GLN A:419 , HOH A:598 , ARG B:549
BINDING SITE FOR RESIDUE CL A 558
09
AC9
SOFTWARE
ASN A:175 , GLY A:287 , HOH A:1053 , HOH A:1302
BINDING SITE FOR RESIDUE CL A 559
10
BC1
SOFTWARE
MET A:26 , ASP A:27 , HOH A:2211 , HOH A:2711
BINDING SITE FOR RESIDUE CL A 560
11
BC2
SOFTWARE
ALA A:452 , HOH A:2855
BINDING SITE FOR RESIDUE CL A 561
12
BC3
SOFTWARE
GLN A:24 , ASP A:25 , GLY A:396 , THR A:397 , LYS A:398 , LEU A:399 , ASN A:467 , ARG A:468 , HOH A:2008 , HOH A:2467 , HOH A:2504 , HOH A:3493 , PEG B:561
BINDING SITE FOR RESIDUE PG4 A 562
13
BC4
SOFTWARE
GLU B:62 , HOH B:638 , HOH B:651 , HOH B:1182
BINDING SITE FOR RESIDUE CA B 551
14
BC5
SOFTWARE
GLY A:330 , CA A:554 , HOH A:3970 , HOH A:3971 , GLU B:332 , HOH B:4111
BINDING SITE FOR RESIDUE CA B 552
15
BC6
SOFTWARE
ARG B:95 , ALA B:96 , TRP B:267 , HOH B:1188 , HOH B:1869
BINDING SITE FOR RESIDUE CL B 553
16
BC7
SOFTWARE
ASN B:175 , GLY B:287 , HOH B:731 , HOH B:1657
BINDING SITE FOR RESIDUE CL B 554
17
BC8
SOFTWARE
ASN B:327 , TYR B:371 , GLN B:372 , HOH B:2282
BINDING SITE FOR RESIDUE CL B 555
18
BC9
SOFTWARE
ASP B:266 , HOH B:1729 , HOH B:1869 , HOH B:3152 , HOH B:3651
BINDING SITE FOR RESIDUE CL B 556
19
CC1
SOFTWARE
ASN B:104 , ASN B:107 , MET B:118 , ASN B:122 , HOH B:596 , HOH B:3987
BINDING SITE FOR RESIDUE CL B 557
20
CC2
SOFTWARE
LYS B:72 , LEU B:76 , GLN B:77 , PHE B:310 , HOH B:1482 , HOH B:2632
BINDING SITE FOR RESIDUE CL B 558
21
CC3
SOFTWARE
PHE A:32 , HOH A:890 , ASP B:535 , SER B:536 , HOH B:658 , HOH B:1354
BINDING SITE FOR RESIDUE CL B 559
22
CC4
SOFTWARE
HOH B:720 , HOH B:1465 , HOH B:1875 , HOH B:2002 , HOH B:3986
BINDING SITE FOR RESIDUE NA B 560
23
CC5
SOFTWARE
PG4 A:562 , TYR B:371 , GLN B:372 , HOH B:1094
BINDING SITE FOR RESIDUE PEG B 561
24
CC6
SOFTWARE
GLU C:62 , HOH C:617 , HOH C:734 , HOH C:1246
BINDING SITE FOR RESIDUE CA C 551
25
CC7
SOFTWARE
ARG C:95 , ALA C:96 , TRP C:267 , HOH C:1993
BINDING SITE FOR RESIDUE CL C 552
26
CC8
SOFTWARE
ASN C:175 , GLY C:287 , HOH C:636
BINDING SITE FOR RESIDUE CL C 553
27
CC9
SOFTWARE
ARG C:549 , GLN D:419 , HOH D:580 , HOH D:714
BINDING SITE FOR RESIDUE CL C 554
28
DC1
SOFTWARE
ASN C:327 , TYR C:371 , GLN C:372 , HOH C:1846
BINDING SITE FOR RESIDUE CL C 555
29
DC2
SOFTWARE
SER C:410 , ASN C:412 , HOH C:624 , HOH C:1255 , GLY D:187
BINDING SITE FOR RESIDUE CL C 556
30
DC3
SOFTWARE
HOH C:651 , HOH C:1214 , HOH C:1811 , HOH C:3215 , HOH C:3913
BINDING SITE FOR RESIDUE NA C 557
31
DC4
SOFTWARE
ARG B:105 , SER B:106 , ASN B:107 , LYS C:450 , HOH C:1379 , HOH C:2803
BINDING SITE FOR RESIDUE PEG C 558
32
DC5
SOFTWARE
ALA B:448 , LYS B:450 , HOH B:1842 , ARG C:105 , SER C:106 , ASN C:107 , HOH C:1326 , HOH C:2774 , HOH C:2888 , HOH C:3994
BINDING SITE FOR RESIDUE PEG C 559
33
DC6
SOFTWARE
VAL C:369 , TYR C:371 , GLN C:372 , HOH C:818 , THR D:397 , PG4 D:561
BINDING SITE FOR RESIDUE PEG C 560
34
DC7
SOFTWARE
HOH B:2124 , GLU D:62 , HOH D:811 , HOH D:830 , HOH D:2011 , HOH D:2302
BINDING SITE FOR RESIDUE CA D 551
35
DC8
SOFTWARE
GLU D:168 , HOH D:1444 , HOH D:1506 , HOH D:2839 , HOH D:3927 , HOH D:3928
BINDING SITE FOR RESIDUE CA D 552
36
DC9
SOFTWARE
GLU D:253 , HOH D:2802 , HOH D:3337 , HOH D:3881 , HOH D:3930 , HOH D:3985
BINDING SITE FOR RESIDUE CA D 553
37
EC1
SOFTWARE
ARG D:95 , ALA D:96 , HOH D:1885 , HOH D:2032
BINDING SITE FOR RESIDUE CL D 554
38
EC2
SOFTWARE
ASN D:327 , TYR D:371 , GLN D:372 , HOH D:1477 , HOH D:1656
BINDING SITE FOR RESIDUE CL D 555
39
EC3
SOFTWARE
ASN D:175 , GLY D:287 , HOH D:1031 , HOH D:1418 , HOH D:3873
BINDING SITE FOR RESIDUE CL D 556
40
EC4
SOFTWARE
LYS D:127 , MET D:261 , GLU D:263
BINDING SITE FOR RESIDUE CL D 557
41
EC5
SOFTWARE
MET D:26 , ASP D:27 , HOH D:2120 , HOH D:3226 , HOH D:3709
BINDING SITE FOR RESIDUE CL D 558
42
EC6
SOFTWARE
ILE D:89 , PHE D:506 , HOH D:565 , HOH D:574
BINDING SITE FOR RESIDUE CL D 559
43
EC7
SOFTWARE
ALA D:452 , HOH D:2046
BINDING SITE FOR RESIDUE CL D 560
44
EC8
SOFTWARE
PEG C:560 , GLN D:24 , GLY D:396 , THR D:397 , LEU D:399 , ASN D:467 , ARG D:468 , HOH D:1814 , HOH D:1882 , HOH D:2122 , HOH D:2505 , HOH D:3887
BINDING SITE FOR RESIDUE PG4 D 561
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: P_GLUCOSE_ISOMERASE_3 (A:10-548,B:10-548,C:10-548,D:10-54...)
2: P_GLUCOSE_ISOMERASE_1 (A:266-279,B:266-279,C:266-279,D:26...)
3: P_GLUCOSE_ISOMERASE_2 (A:498-515,B:498-515,C:498-515,D:49...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_GLUCOSE_ISOMERASE_3
PS51463
Glucose-6-phosphate isomerase family profile.
G6PI_VIBCH
10-548
4
A:10-548
B:10-548
C:10-548
D:10-548
2
P_GLUCOSE_ISOMERASE_1
PS00765
Phosphoglucose isomerase signature 1.
G6PI_VIBCH
266-279
4
A:266-279
B:266-279
C:266-279
D:266-279
3
P_GLUCOSE_ISOMERASE_2
PS00174
Phosphoglucose isomerase signature 2.
G6PI_VIBCH
498-515
4
A:498-515
B:498-515
C:498-515
D:498-515
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3hjba_ (A:)
1b: SCOP_d3hjbb_ (B:)
1c: SCOP_d3hjbc_ (C:)
1d: SCOP_d3hjbd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
Phosphoglucose isomerase, PGI
(37)
Protein domain
:
automated matches
(13)
Vibrio cholerae [TaxId: 666]
(1)
1a
d3hjba_
A:
1b
d3hjbb_
B:
1c
d3hjbc_
C:
1d
d3hjbd_
D:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_3hjbA02 (A:99-292)
1b: CATH_3hjbB02 (B:99-292)
1c: CATH_3hjbC02 (C:99-292)
1d: CATH_3hjbD02 (D:99-292)
1e: CATH_3hjbA01 (A:0-98,A:293-511)
1f: CATH_3hjbB01 (B:0-98,B:293-511)
1g: CATH_3hjbC01 (C:0-98,C:293-511)
1h: CATH_3hjbD01 (D:0-98,D:293-511)
2a: CATH_3hjbA03 (A:512-550)
2b: CATH_3hjbB03 (B:512-550)
2c: CATH_3hjbC03 (C:512-550)
2d: CATH_3hjbD03 (D:512-550)
View:
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Architectures
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Topologies
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
1a
3hjbA02
A:99-292
1b
3hjbB02
B:99-292
1c
3hjbC02
C:99-292
1d
3hjbD02
D:99-292
1e
3hjbA01
A:0-98,A:293-511
1f
3hjbB01
B:0-98,B:293-511
1g
3hjbC01
C:0-98,C:293-511
1h
3hjbD01
D:0-98,D:293-511
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphoglucose isomerase, C-terminal domain
(32)
Homologous Superfamily
:
[code=1.10.1390.10, no name defined]
(32)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
2a
3hjbA03
A:512-550
2b
3hjbB03
B:512-550
2c
3hjbC03
C:512-550
2d
3hjbD03
D:512-550
[
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Pfam Domains
(0, 0)
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all PFAM domains
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