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3HJB
Biol. Unit 2
Info
Asym.Unit (469 KB)
Biol.Unit 1 (232 KB)
Biol.Unit 2 (228 KB)
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(1)
Title
:
1.5 ANGSTROM CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE FROM VIBRIO CHOLERAE.
Authors
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papa W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
21 May 09 (Deposition) - 16 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Glucose-6-Phosphate Isomerase, Pgi, Idp01329, Gluconeogenesis, Glycolysis, Isomerase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 5 Angstrom Crystal Structure Of Glucose-6-Phosphate Isomerase From Vibrio Cholerae.
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: CC6 (SOFTWARE)
03: CC7 (SOFTWARE)
04: CC8 (SOFTWARE)
05: CC9 (SOFTWARE)
06: DC1 (SOFTWARE)
07: DC2 (SOFTWARE)
08: DC3 (SOFTWARE)
09: DC4 (SOFTWARE)
10: DC5 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
13: DC8 (SOFTWARE)
14: DC9 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
17: EC3 (SOFTWARE)
18: EC4 (SOFTWARE)
19: EC5 (SOFTWARE)
20: EC6 (SOFTWARE)
21: EC7 (SOFTWARE)
22: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:62 , HOH A:812 , HOH A:921 , HOH A:2078 , HOH A:2216 , HOH A:3413 , HOH C:2469
BINDING SITE FOR RESIDUE CA A 551
02
CC6
SOFTWARE
GLU C:62 , HOH C:617 , HOH C:734 , HOH C:1246
BINDING SITE FOR RESIDUE CA C 551
03
CC7
SOFTWARE
ARG C:95 , ALA C:96 , TRP C:267 , HOH C:1993
BINDING SITE FOR RESIDUE CL C 552
04
CC8
SOFTWARE
ASN C:175 , GLY C:287 , HOH C:636
BINDING SITE FOR RESIDUE CL C 553
05
CC9
SOFTWARE
ARG C:549 , GLN D:419 , HOH D:580 , HOH D:714
BINDING SITE FOR RESIDUE CL C 554
06
DC1
SOFTWARE
ASN C:327 , TYR C:371 , GLN C:372 , HOH C:1846
BINDING SITE FOR RESIDUE CL C 555
07
DC2
SOFTWARE
SER C:410 , ASN C:412 , HOH C:624 , HOH C:1255 , GLY D:187
BINDING SITE FOR RESIDUE CL C 556
08
DC3
SOFTWARE
HOH C:651 , HOH C:1214 , HOH C:1811 , HOH C:3215 , HOH C:3913
BINDING SITE FOR RESIDUE NA C 557
09
DC4
SOFTWARE
ARG B:105 , SER B:106 , ASN B:107 , LYS C:450 , HOH C:1379 , HOH C:2803
BINDING SITE FOR RESIDUE PEG C 558
10
DC5
SOFTWARE
ALA B:448 , LYS B:450 , HOH B:1842 , ARG C:105 , SER C:106 , ASN C:107 , HOH C:1326 , HOH C:2774 , HOH C:2888 , HOH C:3994
BINDING SITE FOR RESIDUE PEG C 559
11
DC6
SOFTWARE
VAL C:369 , TYR C:371 , GLN C:372 , HOH C:818 , THR D:397 , PG4 D:561
BINDING SITE FOR RESIDUE PEG C 560
12
DC7
SOFTWARE
HOH B:2124 , GLU D:62 , HOH D:811 , HOH D:830 , HOH D:2011 , HOH D:2302
BINDING SITE FOR RESIDUE CA D 551
13
DC8
SOFTWARE
GLU D:168 , HOH D:1444 , HOH D:1506 , HOH D:2839 , HOH D:3927 , HOH D:3928
BINDING SITE FOR RESIDUE CA D 552
14
DC9
SOFTWARE
GLU D:253 , HOH D:2802 , HOH D:3337 , HOH D:3881 , HOH D:3930 , HOH D:3985
BINDING SITE FOR RESIDUE CA D 553
15
EC1
SOFTWARE
ARG D:95 , ALA D:96 , HOH D:1885 , HOH D:2032
BINDING SITE FOR RESIDUE CL D 554
16
EC2
SOFTWARE
ASN D:327 , TYR D:371 , GLN D:372 , HOH D:1477 , HOH D:1656
BINDING SITE FOR RESIDUE CL D 555
17
EC3
SOFTWARE
ASN D:175 , GLY D:287 , HOH D:1031 , HOH D:1418 , HOH D:3873
BINDING SITE FOR RESIDUE CL D 556
18
EC4
SOFTWARE
LYS D:127 , MET D:261 , GLU D:263
BINDING SITE FOR RESIDUE CL D 557
19
EC5
SOFTWARE
MET D:26 , ASP D:27 , HOH D:2120 , HOH D:3226 , HOH D:3709
BINDING SITE FOR RESIDUE CL D 558
20
EC6
SOFTWARE
ILE D:89 , PHE D:506 , HOH D:565 , HOH D:574
BINDING SITE FOR RESIDUE CL D 559
21
EC7
SOFTWARE
ALA D:452 , HOH D:2046
BINDING SITE FOR RESIDUE CL D 560
22
EC8
SOFTWARE
PEG C:560 , GLN D:24 , GLY D:396 , THR D:397 , LEU D:399 , ASN D:467 , ARG D:468 , HOH D:1814 , HOH D:1882 , HOH D:2122 , HOH D:2505 , HOH D:3887
BINDING SITE FOR RESIDUE PG4 D 561
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: P_GLUCOSE_ISOMERASE_3 (C:10-548,D:10-548)
2: P_GLUCOSE_ISOMERASE_1 (C:266-279,D:266-279)
3: P_GLUCOSE_ISOMERASE_2 (C:498-515,D:498-515)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P_GLUCOSE_ISOMERASE_3
PS51463
Glucose-6-phosphate isomerase family profile.
G6PI_VIBCH
10-548
2
-
-
C:10-548
D:10-548
2
P_GLUCOSE_ISOMERASE_1
PS00765
Phosphoglucose isomerase signature 1.
G6PI_VIBCH
266-279
2
-
-
C:266-279
D:266-279
3
P_GLUCOSE_ISOMERASE_2
PS00174
Phosphoglucose isomerase signature 2.
G6PI_VIBCH
498-515
2
-
-
C:498-515
D:498-515
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3hjba_ (A:)
1b: SCOP_d3hjbb_ (B:)
1c: SCOP_d3hjbc_ (C:)
1d: SCOP_d3hjbd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
Phosphoglucose isomerase, PGI
(37)
Protein domain
:
automated matches
(13)
Vibrio cholerae [TaxId: 666]
(1)
1a
d3hjba_
A:
1b
d3hjbb_
B:
1c
d3hjbc_
C:
1d
d3hjbd_
D:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_3hjbA02 (A:99-292)
1b: CATH_3hjbB02 (B:99-292)
1c: CATH_3hjbC02 (C:99-292)
1d: CATH_3hjbD02 (D:99-292)
1e: CATH_3hjbA01 (A:0-98,A:293-511)
1f: CATH_3hjbB01 (B:0-98,B:293-511)
1g: CATH_3hjbC01 (C:0-98,C:293-511)
1h: CATH_3hjbD01 (D:0-98,D:293-511)
2a: CATH_3hjbA03 (A:512-550)
2b: CATH_3hjbB03 (B:512-550)
2c: CATH_3hjbC03 (C:512-550)
2d: CATH_3hjbD03 (D:512-550)
View:
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
1a
3hjbA02
A:99-292
1b
3hjbB02
B:99-292
1c
3hjbC02
C:99-292
1d
3hjbD02
D:99-292
1e
3hjbA01
A:0-98,A:293-511
1f
3hjbB01
B:0-98,B:293-511
1g
3hjbC01
C:0-98,C:293-511
1h
3hjbD01
D:0-98,D:293-511
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphoglucose isomerase, C-terminal domain
(32)
Homologous Superfamily
:
[code=1.10.1390.10, no name defined]
(32)
Vibrio cholerae. Organism_taxid: 666. Strain: o1 biovar el tor str. N16961.
(1)
2a
3hjbA03
A:512-550
2b
3hjbB03
B:512-550
2c
3hjbC03
C:512-550
2d
3hjbD03
D:512-550
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Pfam Domains
(0, 0)
Info
all PFAM domains
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