3HGW - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   APO STRUCTURE OF PSEUDOMONAS AERUGINOSA ISOCHORISMATE-PYRUVATE LYASE I87T MUTANT

Authors :   Q. Luo, A. L. Lamb

Date :   14 May 09 (Deposition) - 30 Jun 09 (Release) - 30 Jun 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Siderophore Biosynthesis, Pyochelin, Isochorismate-Pyruvate Lyase, Chorismate Mutase, Pchb, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Luo, J. Olucha, A. L. Lamb
Structure-Function Analyses Of Isochorismate-Pyruvate Lyase From Pseudomonas Aeruginosa Suggest Differing Catalytic Mechanisms For The Two Pericyclic Reactions Of This Bifunctional Enzyme
Biochemistry V. 48 5239 2009
PubMed-ID: 19432488 | Reference-DOI: 10.1021/BI900456E
(for further references see the PDB file header)

Molecule 1 - SALICYLATE BIOSYNTHESIS PROTEIN PCHB
	Chains	:	C, D, A, B
	EC Number	:	4.1.99.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET29B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PCHB, PA4230
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Strain	:	PAO1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:			C	D
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:15 , ASP A:18 , GLU D:15 , ASP D:18	BINDING SITE FOR RESIDUE CA D 99

(no "SS Bond" information available for 3HGW)

Asymmetric Unit

No.	Residues
1	Ile D:48	-	Pro D:49

(no "SAP(SNP)/Variant" information available for 3HGW)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_2	PS51168	Chorismate mutase domain profile.	PCHB_PSEAE	4-94	3	A:4-94 C:4-94 D:4-94

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_2	PS51168	Chorismate mutase domain profile.	PCHB_PSEAE	4-94	2	- C:4-94 D:4-94

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_2	PS51168	Chorismate mutase domain profile.	PCHB_PSEAE	4-94	1	A:4-94 - -

(no "Exon" information available for 3HGW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:81
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:93
                                    11        21        31        41        51        61        71        81        91   
            PCHB_PSEAE    2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYW 94
               SCOP domains d3hgwa_ A: automated matches                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------------hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_2  PDB: A:4-94 UniProt: 4-94                                                 PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3hgw A  2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKA------------AMLPERARWAEENGLDAPFVEGLFAQIIHWYTAEQIKYW 94
                                    11        21        31        41 |       -    |   61        71        81        91   
                                                                    43           56

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:84
                                    19        29        39        49        59        69        79        89    
            PCHB_PSEAE   10 LADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKY 93
               SCOP domains d3hgwb_ B: automated matches                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CHORISMATE_MUT_2  PDB: - UniProt: 4-94                                               PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  3hgw B 10 LADIREAIDRIDLDIVQALGRRMDYVKAASRF---------PERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYTAEQIKY 93
                                    19        29        39 |       - |      59        69        79        89    
                                                          41        51

Chain C from PDB  Type:PROTEIN  Length:83
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
            PCHB_PSEAE    2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQTR 98
               SCOP domains d3hgwc_ C: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--------------...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_2  PDB: C:4-94 UniProt: 4-94                                                ---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3hgw C  2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAAS--------------VAAMLPERARWAEENGLDAPFVEGLFAQIIHWYTAEQIKYWRQTR 98
                                    11        21        31       | -         -  |     61        71        81        91       
                                                                39             54

Chain D from PDB  Type:PROTEIN  Length:97
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:97
                                    11        21        31        41        51        61        71        81        91       
            PCHB_PSEAE    2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQTR 98
               SCOP domains d3hgwd_ D: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --CHORISMATE_MUT_2  PDB: D:4-94 UniProt: 4-94                                                ---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3hgw D  2 KTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYTAEQIKYWRQTR 98
                                    11        21        31        41        51        61        71        81        91

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Chorismate mutase II (21)

Superfamily: Chorismate mutase II (21)

Family: Dimeric chorismate mutase (10)

Protein domain: automated matches (4)

Pseudomonas aeruginosa [TaxId: 287] (4)

1a	d3hgwa_	A:
1b	d3hgwb_	B:
1c	d3hgwc_	C:
1d	d3hgwd_	D:

(no "CATH Domain" information available for 3HGW)

(no "Pfam Domain" information available for 3HGW)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PCHB_PSEAE | Q51507)

molecular function
	GO:0016835	carbon-oxygen lyase activity	Catalysis of the breakage of a carbon-oxygen bond.
	GO:0004106	chorismate mutase activity	Catalysis of the reaction: chorismate = prephenate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0046417	chorismate metabolic process	The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.
	GO:0042864	pyochelin biosynthetic process	The chemical reactions and pathways resulting in the formation of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid).
	GO:0009697	salicylic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ile D:48 - Pro D:49	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3hgw
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PCHB_PSEAE \| Q51507
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	4.1.99.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PCHB_PSEAE \| Q51507
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PCHB_PSEAE \| Q51507	:	2h9c 2h9d 3hgx 3rem 3ret

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File