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Title :   SALICYLATE AND PYRUVATE BOUND STRUCTURE OF THE ISOCHORISMATE-PYRUVATE LYASE K42E MUTANT FROM PSEUDOMONAS AERUGIONSA

Authors :   J. Olucha, A. N. Ouellette, Q. Luo, A. L. Lamb

Date :   05 Apr 11 (Deposition) - 27 Jul 11 (Release) - 31 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.79

Chains :   Asym./Biol. Unit : A,B

Keywords :   Intertwined Dimer, Lyase, Mutase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Olucha, A. N. Ouellette, Q. Luo, A. L. Lamb
Ph Dependence Of Catalysis By Pseudomonas Aeruginosa Isochorismate-Pyruvate Lyase: Implications For Transition State Stabilization And The Role Of Lysine 42.
Biochemistry V. 50 7198 2011
PubMed-ID: 21751784 | Reference-DOI: 10.1021/BI200599J

Molecule 1 - SALICYLATE BIOSYNTHESIS PROTEIN PCHB
	Chains	:	A, B
	EC Number	:	4.1.99.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET29B
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PA4230, PCHB
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Strain	:	PAO1

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	PYR	2	Ligand/Ion	PYRUVIC ACID
2	SAL	2	Ligand/Ion	2-HYDROXYBENZOIC ACID

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:31 , VAL A:35 , ILE A:48 , VAL A:54 , MET A:57 , TYR A:86 , ILE A:87 , GLN A:90 , HOH A:111 , PYR B:301	BINDING SITE FOR RESIDUE SAL A 201
2	AC2	SOFTWARE	GLU A:42 , GLN A:90 , HOH A:111 , SAL A:201 , ARG B:14 , ILE B:17	BINDING SITE FOR RESIDUE PYR B 301
3	AC3	SOFTWARE	HOH A:107 , PYR A:301 , ARG B:31 , VAL B:35 , ILE B:48 , MET B:57 , TYR B:86 , ILE B:87 , GLN B:90	BINDING SITE FOR RESIDUE SAL B 201
4	AC4	SOFTWARE	ARG A:14 , HOH A:107 , ALA B:38 , ALA B:50 , GLN B:90 , SAL B:201	BINDING SITE FOR RESIDUE PYR A 301

(no "SS Bond" information available for 3RET)

(no "Cis Peptide Bond" information available for 3RET)

(no "SAP(SNP)/Variant" information available for 3RET)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CHORISMATE_MUT_2	PS51168	Chorismate mutase domain profile.	PCHB_PSEAE	4-94	2	A:4-94 B:4-94

(no "Exon" information available for 3RET)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:97
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:97
                                    10        20        30        40        50        60        70        80        90       
            PCHB_PSEAE    1 MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQT 97
               SCOP domains d3reta_ A: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---CHORISMATE_MUT_2  PDB: A:4-94 UniProt: 4-94                                                --- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3ret A  1 MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFEASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQT 97
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:91
 aligned with PCHB_PSEAE | Q51507 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:97
                                    10        20        30        40        50        60        70        80        90       
            PCHB_PSEAE    1 MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQT 97
               SCOP domains d3retb_ B: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..------..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---CHORISMATE_MUT_2  PDB: B:4-94 UniProt: 4-94                                                --- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3ret B  1 MKTPEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRF------IPAPERVAAMLPERARWAEENGLDAPFVEGLFAQIIHWYIAEQIKYWRQT 97
                                    10        20        30        40|      |50        60        70        80        90       
                                                                   41     48

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Chorismate mutase II (21)

Superfamily: Chorismate mutase II (21)

Family: Dimeric chorismate mutase (10)

Protein domain: automated matches (4)

Pseudomonas aeruginosa [TaxId: 287] (4)

1a	d3reta_	A:
1b	d3retb_	B:

(no "CATH Domain" information available for 3RET)

(no "Pfam Domain" information available for 3RET)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PCHB_PSEAE | Q51507)

molecular function
	GO:0016835	carbon-oxygen lyase activity	Catalysis of the breakage of a carbon-oxygen bond.
	GO:0004106	chorismate mutase activity	Catalysis of the reaction: chorismate = prephenate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0046417	chorismate metabolic process	The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.
	GO:0042864	pyochelin biosynthetic process	The chemical reactions and pathways resulting in the formation of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid).
	GO:0009697	salicylic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ret)

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	4.1.99.-
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	PCHB_PSEAE \| Q51507	:	2h9c 2h9d 3hgw 3hgx 3rem

Description

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Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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