3GXG - JenaLib

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Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PUTATIVE PHOSPHATASE (DUF442) (YP_001181608.1) FROM SHEWANELLA PUTREFACIENS CN-32 AT 1.60 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   02 Apr 09 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B  (4x)
Biol. Unit 6: C,D  (4x)

Keywords :   Yp_001181608. 1, Putative Phosphatase (Duf442), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Tyrosine Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Phosphatase (Duf442) (Yp_001181608. 1) From Shewanella Putrefaciens Cn-32 At 1. 60 A Resolution
To Be Published
PubMed: search

Molecule 1 - PUTATIVE PHOSPHATASE (DUF442)
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SPUTCN32_0073, YP_001181608.1
	Organism Scientific	:	SHEWANELLA PUTREFACIENS
	Organism Taxid	:	319224
	Strain	:	CN-32

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (4x)	:	A	B
Biological Unit 6 (4x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 51)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	CL	6	Ligand/Ion	CHLORIDE ION
3	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 12)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (4, 10)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 11)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (4, 12)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 5 (4, 88)

No.	Name	Count	Type	Full Name
1	ACT	8	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	20	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	40	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	20	Ligand/Ion	SULFATE ION

Biological Unit 6 (4, 92)

No.	Name	Count	Type	Full Name
1	ACT	8	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	28	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	40	Mod. Amino Acid	SELENOMETHIONINE
5	SO4	16	Ligand/Ion	SULFATE ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:125 , LEU A:126 , ALA A:127 , ASN A:128 , TYR A:129 , ARG A:130 , HOH A:414 , HOH A:418	BINDING SITE FOR RESIDUE SO4 A 201
02	AC2	SOFTWARE	ARG A:34 , ALA A:35 , ALA A:127 , ASN A:145 , HOH A:618 , HOH A:1092	BINDING SITE FOR RESIDUE SO4 A 208
03	AC3	SOFTWARE	ASN A:23 , PRO A:41 , HOH A:821 , HOH A:892 , HOH A:897 , ASN B:23 , PRO B:41 , HOH B:481	BINDING SITE FOR RESIDUE SO4 A 209
04	AC4	SOFTWARE	GLN A:53 , HOH B:453	BINDING SITE FOR RESIDUE CL A 210
05	AC5	SOFTWARE	ASN A:147 , THR A:151 , HOH A:943	BINDING SITE FOR RESIDUE CL A 211
06	AC6	SOFTWARE	LYS A:164 , ALA A:174 , HOH A:518	BINDING SITE FOR RESIDUE CL A 214
07	AC7	SOFTWARE	PRO A:70 , ASP A:71 , SER A:72 , TYR A:93 , HOH A:789 , HOH A:957 , HOH A:981	BINDING SITE FOR RESIDUE EDO A 217
08	AC8	SOFTWARE	ASN A:50 , GLU A:51 , HIS A:77 , HOH A:647 , HOH A:1086 , LYS C:58	BINDING SITE FOR RESIDUE EDO A 221
09	AC9	SOFTWARE	PRO A:101 , GLU A:171 , HOH A:388 , HOH A:399 , HOH A:403 , ALA B:174 , HOH B:1157	BINDING SITE FOR RESIDUE EDO A 379
10	BC1	SOFTWARE	ALA A:149 , MSE A:152 , ASP A:157 , HOH A:401 , HOH A:638 , HOH A:1018 , HOH A:1109	BINDING SITE FOR RESIDUE ACT A 380
11	BC2	SOFTWARE	CYS B:125 , LEU B:126 , ALA B:127 , ASN B:128 , TYR B:129 , ARG B:130 , HOH B:420 , HOH B:421	BINDING SITE FOR RESIDUE SO4 B 202
12	BC3	SOFTWARE	ARG B:34 , ALA B:127 , ASN B:145 , HOH B:551 , HOH B:1035	BINDING SITE FOR RESIDUE SO4 B 207
13	BC4	SOFTWARE	ASN B:50 , GLU B:51	BINDING SITE FOR RESIDUE CL B 212
14	BC5	SOFTWARE	ASN B:147 , THR B:151	BINDING SITE FOR RESIDUE CL B 213
15	BC6	SOFTWARE	ASP B:71 , SER B:72 , TYR B:93 , HOH B:719 , HOH B:806	BINDING SITE FOR RESIDUE EDO B 216
16	BC7	SOFTWARE	ALA A:174 , HOH A:507 , HOH A:1159 , PRO B:101 , LYS B:102 , GLU B:171 , HOH B:396 , HOH B:406 , HOH B:422	BINDING SITE FOR RESIDUE EDO B 379
17	BC8	SOFTWARE	MSE B:152 , ASP B:157 , HOH B:432 , HOH B:698 , HOH B:711	BINDING SITE FOR RESIDUE ACT B 380
18	BC9	SOFTWARE	CYS C:125 , LEU C:126 , ALA C:127 , ASN C:128 , TYR C:129 , ARG C:130 , HOH C:386 , HOH C:419	BINDING SITE FOR RESIDUE SO4 C 203
19	CC1	SOFTWARE	ARG C:34 , ALA C:35 , ALA C:127 , ASN C:145 , HOH C:515 , HOH C:740 , HOH C:985	BINDING SITE FOR RESIDUE SO4 C 205
20	CC2	SOFTWARE	LYS C:164 , ALA C:174 , HOH C:411	BINDING SITE FOR RESIDUE CL C 215
21	CC3	SOFTWARE	ASP C:71 , SER C:72 , TYR C:93 , HOH C:695 , HOH C:798	BINDING SITE FOR RESIDUE EDO C 218
22	CC4	SOFTWARE	PRO C:101 , LYS C:102 , GLU C:171 , HOH C:382 , HOH C:387 , HOH C:459 , ALA D:174	BINDING SITE FOR RESIDUE EDO C 220
23	CC5	SOFTWARE	ASN C:147 , GLN C:150 , THR C:151 , HOH C:598 , HOH C:962	BINDING SITE FOR RESIDUE EDO C 379
24	CC6	SOFTWARE	ALA C:149 , MSE C:152 , ASP C:157 , HOH C:414 , HOH C:750	BINDING SITE FOR RESIDUE ACT C 380
25	CC7	SOFTWARE	CYS D:125 , LEU D:126 , ALA D:127 , ASN D:128 , TYR D:129 , ARG D:130 , HOH D:426 , HOH D:428	BINDING SITE FOR RESIDUE SO4 D 204
26	CC8	SOFTWARE	ARG D:34 , ALA D:35 , ALA D:127 , ASN D:145 , HOH D:600 , HOH D:1101	BINDING SITE FOR RESIDUE SO4 D 206
27	CC9	SOFTWARE	ASP D:71 , SER D:72 , TYR D:93 , HOH D:633 , HOH D:960	BINDING SITE FOR RESIDUE EDO D 219
28	DC1	SOFTWARE	ASN D:50 , GLU D:51 , HIS D:77 , HOH D:457 , HOH D:1051 , HOH D:1141	BINDING SITE FOR RESIDUE EDO D 222
29	DC2	SOFTWARE	ALA C:174 , PRO D:101 , LEU D:168 , GLU D:171 , HOH D:390 , HOH D:463	BINDING SITE FOR RESIDUE EDO D 379
30	DC3	SOFTWARE	GLN D:37 , GLN D:38 , GLN D:39 , HOH D:706 , HOH D:886	BINDING SITE FOR RESIDUE EDO D 380
31	DC4	SOFTWARE	ALA D:149 , MSE D:152 , ASP D:157 , HOH D:415 , HOH D:1017	BINDING SITE FOR RESIDUE ACT D 381

(no "SS Bond" information available for 3GXG)

(no "Cis Peptide Bond" information available for 3GXG)

(no "SAP(SNP)/Variant" information available for 3GXG)

(no "PROSITE Motif" information available for 3GXG)

(no "Exon" information available for 3GXG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:157
 aligned with A4Y1H6_SHEPC | A4Y1H6 from UniProtKB/TrEMBL  Length:178

    Alignment length:157
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         A4Y1H6_SHEPC    22 ANIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNMAQTMTPWNDELAIYPKWQALLTEVSAKYGH 178
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeee..eeee...hhhhhhhhhhh...eeee...........hhhhhhhhh..eeee........hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gxg A   0 GNIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLmPDSSKDAHPDEGKLVTQAGmDYVYIPVDWQNPKVEDVEAFFAAmDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNmAQTmTPWNDELAIYPKWQALLTEVSAKYGH 178
                            ||      31        41        51        61       |71        81       |91       101       111 |     121       131       141      |151|      161       171       
                            ||                                            69-MSE              89-MSE                 113-MSE                            148-MSE                          
                            0|                                                                                                                              152-MSE                      
                            23

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with A4Y1H6_SHEPC | A4Y1H6 from UniProtKB/TrEMBL  Length:178

    Alignment length:157
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         A4Y1H6_SHEPC    22 ANIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNMAQTMTPWNDELAIYPKWQALLTEVSAKYGH 178
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeee..eeee......hhhhhhhh...eeee...........hhhhhhhhh..eeee........hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gxg B   0 GNIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLmPDSSKDAHPDEGKLVTQAGmDYVYIPVDWQNPKVEDVEAFFAAmDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNmAQTmTPWNDELAIYPKWQALLTEVSAKYGH 178
                            ||      31        41        51        61       |71        81       |91       101       111 |     121       131       141      |151|      161       171       
                            0|                                            69-MSE              89-MSE                 113-MSE                            148-MSE                          
                            23                                                                                                                              152-MSE

Chain C from PDB  Type:PROTEIN  Length:157
 aligned with A4Y1H6_SHEPC | A4Y1H6 from UniProtKB/TrEMBL  Length:178

    Alignment length:157
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         A4Y1H6_SHEPC    22 ANIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNMAQTMTPWNDELAIYPKWQALLTEVSAKYGH 178
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeee..eeee...hhhhhhhhhhh...eeee...........hhhhhhhhh..eeee........hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gxg C   0 GNIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLmPDSSKDAHPDEGKLVTQAGmDYVYIPVDWQNPKVEDVEAFFAAmDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNmAQTmTPWNDELAIYPKWQALLTEVSAKYGH 178
                            ||      31        41        51        61       |71        81       |91       101       111 |     121       131       141      |151|      161       171       
                            0|                                            69-MSE              89-MSE                 113-MSE                            148-MSE                          
                            23                                                                                                                              152-MSE

Chain D from PDB  Type:PROTEIN  Length:157
 aligned with A4Y1H6_SHEPC | A4Y1H6 from UniProtKB/TrEMBL  Length:178

    Alignment length:157
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         A4Y1H6_SHEPC    22 ANIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNMAQTMTPWNDELAIYPKWQALLTEVSAKYGH 178
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.....eeee..eeee...hhhhhhhhhhh...eeee...........hhhhhhhhh..eeee........hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gxg D   0 GNIESIENLQGIRALQQQAPQLLSSGLPNEQQFSLLKQAGVDVVINLmPDSSKDAHPDEGKLVTQAGmDYVYIPVDWQNPKVEDVEAFFAAmDQHKGKDVLVHCLANYRASAFAYLYQLKQGQNPNmAQTmTPWNDELAIYPKWQALLTEVSAKYGH 178
                            ||      31        41        51        61       |71        81       |91       101       111 |     121       131       141      |151|      161       171       
                            0|                                            69-MSE              89-MSE                 113-MSE                            148-MSE                          
                            23                                                                                                                              152-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3GXG)

(no "CATH Domain" information available for 3GXG)

(no "Pfam Domain" information available for 3GXG)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (A4Y1H6_SHEPC | A4Y1H6)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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	3gxg
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	A4Y1H6_SHEPC \| A4Y1H6	:	3gxh

(no "Related Entries Specified in the PDB File" available for 3GXG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 51)

Sites (31, 31)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (1, 1)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File