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(-) Description

Title :  INTRAMOLECULAR CHAPERONE
 
Authors :  E. C. Schulz, A. Dickmanns, R. Ficner
Date :  31 Mar 09  (Deposition) - 02 Feb 10  (Release) - 07 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,F  (1x)
Biol. Unit 2:  C,D,E  (1x)
Keywords :  Chaperone, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. C. Schulz, A. Dickmanns, H. Urlaub, A. Schmitt, M. Muhlenhoff, K. Stummeyer, D. Schwarzer, R. Gerardy-Schahn, R. Ficner
Crystal Structure Of An Intramolecular Chaperone Mediating Triple-Beta-Helix Folding.
Nat. Struct. Mol. Biol. V. 17 210 2010
PubMed-ID: 20118935  |  Reference-DOI: 10.1038/NSMB.1746

(-) Compounds

Molecule 1 - ENDO-N-ACETYLNEURAMINIDASE
    Chains: A, B, E, C, D, F
    EC Number: 3.2.1.129
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 790-1064
    Gene: SIA, 17, 17.0
    Organism Common: BACTERIOPHAGE K1F
    Organism Scientific: ENTEROBACTERIA PHAGE K1F
    Organism Taxid: 344021
    Synonym: ENDO-ALPHA-SIALIDASE, GP17 PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB   F
Biological Unit 2 (1x):   CDE 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 34)

Asymmetric Unit (5, 34)
No.NameCountTypeFull Name
1BR6Ligand/IonBROMIDE ION
2CA1Ligand/IonCALCIUM ION
3CL6Ligand/IonCHLORIDE ION
4PEG18Ligand/IonDI(HYDROXYETHYL)ETHER
5TAM3Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
5TAM2Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4PEG11Ligand/IonDI(HYDROXYETHYL)ETHER
5TAM1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:943 , ARG A:952 , HIS A:954BINDING SITE FOR RESIDUE PEG A 2
02AC2SOFTWAREVAL A:921 , ARG A:1048 , VAL B:933 , TYR B:935BINDING SITE FOR RESIDUE PEG A 17
03AC3SOFTWAREASN A:887 , GLU A:914 , BR B:39 , ASP B:942BINDING SITE FOR RESIDUE TAM A 32
04AC4SOFTWAREHOH A:113 , HOH A:241 , ASP A:942 , ASN F:887 , VAL F:888 , GLU F:914BINDING SITE FOR RESIDUE TAM A 35
05AC5SOFTWAREHOH A:222 , THR A:846 , SER A:847BINDING SITE FOR RESIDUE CL A 40
06AC6SOFTWAREHOH B:126 , THR B:846 , SER B:847BINDING SITE FOR RESIDUE BR B 11
07AC7SOFTWAREASN B:887BINDING SITE FOR RESIDUE PEG B 13
08AC8SOFTWAREVAL A:983 , PHE B:955 , HOH F:62BINDING SITE FOR RESIDUE BR B 38
09AC9SOFTWARETAM A:32 , HOH B:136 , HIS B:954BINDING SITE FOR RESIDUE BR B 39
10BC1SOFTWARESER C:878 , HOH E:306 , VAL E:888BINDING SITE FOR RESIDUE PEG E 6
11BC2SOFTWAREASP E:831BINDING SITE FOR RESIDUE PEG E 16
12BC3SOFTWAREHOH D:233 , PRO D:829 , THR D:830 , ASP D:831 , ASN D:832 , GLU E:818 , GLY E:819 , GLU E:820BINDING SITE FOR RESIDUE PEG E 18
13BC4SOFTWARETRP E:940 , ALA E:943 , LYS E:947 , ARG E:952 , HIS E:954BINDING SITE FOR RESIDUE PEG E 21
14BC5SOFTWAREGLU C:818 , GLY C:819 , GLU C:820 , PRO E:829 , THR E:830 , ASP E:831 , ASN E:832BINDING SITE FOR RESIDUE PEG E 22
15BC6SOFTWARETHR E:849BINDING SITE FOR RESIDUE PEG E 33
16BC7SOFTWAREHOH C:149 , HOH E:88 , PHE E:955BINDING SITE FOR RESIDUE BR E 36
17BC8SOFTWARETHR E:846 , SER E:847BINDING SITE FOR RESIDUE CL E 42
18BC9SOFTWAREILE C:828 , PRO C:829 , PRO C:833BINDING SITE FOR RESIDUE PEG C 3
19CC1SOFTWAREPHE C:955 , VAL D:983BINDING SITE FOR RESIDUE BR C 8
20CC2SOFTWARETHR C:846 , SER C:847BINDING SITE FOR RESIDUE CL C 9
21CC3SOFTWAREPHE C:997 , SER C:998BINDING SITE FOR RESIDUE PEG C 14
22CC4SOFTWAREASP C:886 , ASN C:887 , GLU C:914 , HOH E:240 , ASP E:942BINDING SITE FOR RESIDUE TAM C 28
23CC5SOFTWAREPRO C:829 , THR C:830 , ASP C:831 , ASN C:832 , GLU D:818 , GLY D:819 , GLU D:820 , HOH E:127BINDING SITE FOR RESIDUE PEG C 29
24CC6SOFTWAREPHE D:955 , VAL E:983BINDING SITE FOR RESIDUE CL D 10
25CC7SOFTWAREVAL C:888 , ASP D:880 , THR E:899BINDING SITE FOR RESIDUE PEG D 15
26CC8SOFTWAREHOH C:218 , ALA C:959 , LYS D:916BINDING SITE FOR RESIDUE CL D 41
27CC9SOFTWAREVAL B:983 , PHE F:955BINDING SITE FOR RESIDUE CA F 1
28DC1SOFTWAREHOH F:78 , ARG F:837 , ILE F:839 , THR F:846 , GLN F:853 , THR F:855 , THR F:995 , PHE F:997 , TYR F:1020BINDING SITE FOR RESIDUE PEG F 5
29DC2SOFTWAREHOH F:317 , ASN F:860 , ASN F:861 , THR F:862 , SER F:864BINDING SITE FOR RESIDUE PEG F 24
30DC3SOFTWAREASN A:885 , SER F:878BINDING SITE FOR RESIDUE PEG F 30
31DC4SOFTWAREGLU B:818 , GLY B:819 , GLU B:820 , HOH F:135 , PRO F:829 , THR F:830 , ASP F:831 , ASN F:832BINDING SITE FOR RESIDUE PEG F 34
32DC5SOFTWAREPHE A:955 , GLY F:1038BINDING SITE FOR RESIDUE BR F 37

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GW6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser B:976 -Thr B:977
2Gly D:948 -Asn D:949

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GW6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GW6)

(-) Exons   (0, 0)

(no "Exon" information available for 3GW6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:264
                                   809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059    
         FIBER_BPK1F    800 HVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.------.eeeeee...eeeeee.....hhhh.eeeee...........eeeee........eeeee..eeeee...eee..................ee....ee.............hhhhhhhhh....eee.hhhhhhhhhhhh..eee.hhhhhhhhhhhh.......--.....eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3gw6 A  800 HVTIR------IRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENS--CRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
                                |    - |     819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969      |979       989       999      1009      1019      1029      1039      1049      1059    
                              804    811                                                                                                                                                                  976  |                                                                                    
                                                                                                                                                                                                             979                                                                                    


Chain B from PDB  Type:PROTEIN  Length:255
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:264
                                   809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059    
         FIBER_BPK1F    800 HVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..-----.eeeeee...eeeeee.....hhhh.eeeee.....hhhhh.eeeee........eeeee..eeeee...eee..................ee....eee.........ee.hhhhhhhhh....eee.hhhhhhhh---...eee.hhhhhhhhhhhh.....-........eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3gw6 B  800 HVTIRA-----IRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLK---ARIHFGVIAQQIRDVFIAHGLMDE-STNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
                                 |   - |     819       829       839       849       859       869       879       889       899       909       919       929       939       | - |     959       969    | |979       989       999      1009      1019      1029      1039      1049      1059    
                               805   811                                                                                                                                     947 951                    974 |                                                                                       
                                                                                                                                                                                                          976                                                                                       


Chain C from PDB  Type:PROTEIN  Length:254
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:264
                                   809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059    
         FIBER_BPK1F    800 HVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..-----.eeeeee...eeeeee.....hhhh.eeeee...........eeeee........eeeee..eeeee...eee..................ee....ee.............hhhhhhhhh....eee.hhhhhhh.---...eee.hhhhhhhhhhh....--.........eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3gw6 C  800 HVTIRA-----IRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLK---ARIHFGVIAQQIRDVFIAHGLM--NSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
                                 |   - |     819       829       839       849       859       869       879       889       899       909       919       929       939       | - |     959       969  |  | 979       989       999      1009      1019      1029      1039      1049      1059    
                               805   811                                                                                                                                     947 951                  972  |                                                                                        
                                                                                                                                                                                                         975                                                                                        


Chain D from PDB  Type:PROTEIN  Length:252
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:263
                                   809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059   
         FIBER_BPK1F    800 HVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALE 1062
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.------.eeeeee...eeeeee.....hhhh.eeeee.....hhhhh.eeeee........eeeee..eeeee...eee..................ee....ee..........ee.hhhhhhhhh....eee.hhhhhhhhh.....eee.hhhhhhhhhhhh...-----......eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3gw6 D  800 HVTIR------IRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLM-----NCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALE 1062
                                |    - |     819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969  |    979       989       999      1009      1019      1029      1039      1049      1059   
                              804    811                                                                                                                                                              972   978                                                                                    


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:263
                                   810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060   
         FIBER_BPK1F    801 VTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..----..eeeeee...eeeeee.....hhhh.eeeee.....hhhhh.eeeee........eeeee..eeeee...eee..................ee....eee.........ee.hhhhhhhhh....eee.hhhhhhhhhhhh..eee.hhhhhhhhhhhh.....--.......eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3gw6 E  801 VTIRA----NIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDE--TNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
                                |  810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970   |  |980       990      1000      1010      1020      1030      1040      1050      1060   
                              805  810                                                                                                                                                                 974  |                                                                                      
                                                                                                                                                                                                          977                                                                                      


Chain F from PDB  Type:PROTEIN  Length:257
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:264
                                   809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059    
         FIBER_BPK1F    800 HVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTSNGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDENSTNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.------.eeeeee...eeeeee.....hhhh.eeeee.....hhhhh.eeeee........eeeee..eeeee...eee..................ee....eee............hhhhhhhhh....eee.hhhhhhhhhhhh..eee.hhhhhhhhhhh......-........eeeeee..eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3gw6 F  800 HVTIR------IRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVTANGERKTEPVVFDDAFLDAWGDVHYIMYQWLDAVQLKGNDARIHFGVIAQQIRDVFIAHGLMDE-STNCRYAVLCYDKYPRMTDTVFSHNEIVEHTDEEGNVTTTEEPVYTEVVIHEEGEEWGVRPDGIFFAEAAYQRRKLERIEARLSALEQ 1063
                                |    - |     819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969    | |979       989       999      1009      1019      1029      1039      1049      1059    
                              804    811                                                                                                                                                                974 |                                                                                       
                                                                                                                                                                                                          976
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GW6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GW6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GW6)

(-) Gene Ontology  (4, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FIBER_BPK1F | Q04830)
molecular function
    GO:0016996    endo-alpha-(2,8)-sialidase activity    Catalysis of the endohydrolysis of (2->8)-alpha-sialosyl linkages in oligo- or poly(sialic) acids.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

 Visualization

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        FIBER_BPK1F | Q04830: 1v0e 1v0f 3gvj 3gvk 3gvl 3ju4

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3gud