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(-) Description

Title :  ENDOSIALIDASE OF BACTERIOPHAGE K1F IN COMPLEX WITH OLIGOMERIC ALPHA-2,8-SIALIC ACID
 
Authors :  K. Stummeyer, A. Dickmanns, M. Muehlenhoff, R. Gerady-Schahn, R. Ficner
Date :  28 Mar 04  (Deposition) - 13 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Endosialidase, Polysialic Acid Degradation, Hydrolase, Glycosidase. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Stummeyer, A. Dickmanns, M. Muehlenhoff, R. Gerardy-Schahn, R. Ficner
Crystal Structure Of The Polysialic Acid-Degrading Endosialidase Of Bacteriophage K1F
Nat. Struct. Mol. Biol. V. 12 90 2005
PubMed-ID: 15608653  |  Reference-DOI: 10.1038/NSMB874
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ENDO-ALPHA-SIALIDASE
    Chains: A, B, C, D, E, F
    EC Number: 3.2.1.129
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN, RESIDUES 246-911
    Organism Scientific: COLIPHAGE K1F
    Organism Taxid: 344021
    Synonym: ENDOSIALIDASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION
2SIA6Ligand/IonO-SIALIC ACID
3SLB6Ligand/Ion5-N-ACETYL-BETA-D-NEURAMINIC ACID
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
2SIA2Ligand/IonO-SIALIC ACID
3SLB3Ligand/Ion5-N-ACETYL-BETA-D-NEURAMINIC ACID
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
2SIA4Ligand/IonO-SIALIC ACID
3SLB3Ligand/Ion5-N-ACETYL-BETA-D-NEURAMINIC ACID

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:837 , THR A:846 , SER A:848 , GLN A:853 , HOH A:2175 , TYR B:821BINDING SITE FOR RESIDUE SLB A1685
02AC2SOFTWAREARG B:837 , ILE B:839 , THR B:846 , SER B:848 , GLN B:853 , HOH B:2178BINDING SITE FOR RESIDUE SLB B1685
03AC3SOFTWARETYR A:821 , ARG C:837 , ILE C:839 , THR C:846 , SER C:848 , GLN C:853 , ASN C:870 , HOH C:2127BINDING SITE FOR RESIDUE SLB C1685
04AC4SOFTWARESER C:462 , VAL C:464 , GLY C:466 , VAL C:467 , SER C:468 , SIA C:1688BINDING SITE FOR RESIDUE SIA C1686
05AC5SOFTWARETHR B:728 , PHE C:459 , SER C:460 , ASN C:461 , SER C:468 , SIA C:1686 , HOH C:2129 , HOH C:2130BINDING SITE FOR RESIDUE SIA C1688
06AC6SOFTWAREARG D:837 , ILE D:839 , THR D:846 , SER D:848 , GLN D:853 , HOH D:2148 , HOH D:2150 , TYR F:821BINDING SITE FOR RESIDUE SLB D1685
07AC7SOFTWAREVAL D:464 , THR D:465 , GLY D:466 , SER D:468 , SIA D:1688BINDING SITE FOR RESIDUE SIA D1686
08AC8SOFTWAREPHE D:459 , SER D:460 , ASN D:461 , SER D:468 , SIA D:1686 , HOH D:2048 , HOH D:2167 , THR E:728 , SER E:733BINDING SITE FOR RESIDUE SIA D1688
09AC9SOFTWARETYR D:821 , ARG E:837 , ILE E:839 , THR E:846 , SER E:848 , GLN E:853 , HOH E:2127BINDING SITE FOR RESIDUE SLB E1685
10BC1SOFTWARESER E:462 , VAL E:464 , GLY E:466 , SER E:468 , SIA E:1688 , HOH E:2129BINDING SITE FOR RESIDUE SIA E1686
11BC2SOFTWAREPHE E:459 , SER E:460 , ASN E:461 , SER E:468 , SIA E:1686 , HOH E:2130 , THR F:728 , TYR F:729BINDING SITE FOR RESIDUE SIA E1688
12BC3SOFTWAREARG F:837 , THR F:846 , SER F:848 , GLN F:853 , HOH F:2140BINDING SITE FOR RESIDUE SLB F1685
13BC4SOFTWAREGLU A:818 , GLY A:819 , HOH A:2176 , PRO C:829 , THR C:830BINDING SITE FOR RESIDUE PO4 A1686
14BC5SOFTWAREPRO A:829 , THR A:830 , GLU B:818 , GLY B:819BINDING SITE FOR RESIDUE PO4 B1686
15BC6SOFTWAREALA A:805 , PRO B:829 , THR B:830 , GLU C:818 , GLY C:819 , HOH C:2128BINDING SITE FOR RESIDUE PO4 C1687
16BC7SOFTWAREGLU D:818 , GLY D:819 , HOH D:2146 , PRO E:829 , THR E:830 , ALA F:805BINDING SITE FOR RESIDUE PO4 D1687
17BC8SOFTWAREALA D:805 , GLU E:818 , GLY E:819 , THR F:830BINDING SITE FOR RESIDUE PO4 F1686
18BC9SOFTWAREPRO D:829 , THR D:830 , GLU F:818 , GLY F:819BINDING SITE FOR RESIDUE PO4 F1687

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1V0F)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Gln A:330 -Asp A:331
2Tyr A:382 -Pro A:383
3Met A:503 -Gly A:504
4Ala A:547 -Pro A:548
5Gln B:330 -Asp B:331
6Tyr B:382 -Pro B:383
7Met B:503 -Gly B:504
8Ala B:547 -Pro B:548
9Gln C:330 -Asp C:331
10Tyr C:382 -Pro C:383
11Met C:503 -Gly C:504
12Ala C:547 -Pro C:548
13Gln D:330 -Asp D:331
14Tyr D:382 -Pro D:383
15Met D:503 -Gly D:504
16Ala D:547 -Pro D:548
17Gln E:330 -Asp E:331
18Tyr E:382 -Pro E:383
19Met E:503 -Gly E:504
20Ala E:547 -Pro E:548
21Gln F:330 -Asp F:331
22Tyr F:382 -Pro F:383
23Met F:503 -Gly F:504
24Ala F:547 -Pro F:548

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1V0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1V0F)

(-) Exons   (0, 0)

(no "Exon" information available for 1V0F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0fa1 A:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0fa2 A:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fA01 A:245-312 Endo-alpha-sialidase; domain 1                    1v0fA02 A:313-424,A:507-755  [code=2.120.10.10, no name defined]                                                1v0fA03 A:425-506  [code=2.40.30.20, no name defined]                             1v0fA02 A:313-424,A:507-755  [code=2.120.10.10, no name defined]                                                                                                                                                                                         1v0fA04 A:756-910 Endosialidase, domain 4                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeehhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeee..eeee..eeeee........ee....eeeeee.......eeee........eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee...........ee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f A 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      


Chain B from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0fb1 B:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0fb2 B:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fB01 B:245-311 Endo-alpha-sialidase; domain 1                   1v0fB02 B:312-423,B:509-756  [code=2.120.10.10, no name defined]                                                1v0fB03 B:424-508  [code=2.40.30.20, no name defined]                                1v0fB02 B:312-423,B:509-756  [code=2.120.10.10, no name defined]                                                                                                                                                                                        1v0fB04 B:757-910 Endosialidase, domain 4                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeee..eeee..eeeee........ee....eeeeee.......eeeeee......eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee...........ee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f B 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      


Chain C from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0fc1 C:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0fc2 C:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fC01 C:245-312 Endo-alpha-sialidase; domain 1                    1v0fC02 C:313-423,C:511-755  [code=2.120.10.10, no name defined]                                               1v0fC03 C:424-510  [code=2.40.30.20, no name defined]                                  1v0fC02 C:313-423,C:511-755  [code=2.120.10.10, no name defined]                                                                                                                                                                                     1v0fC04 C:756-910 Endosialidase, domain 4                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeeeeeeeee..eeeee........ee....eeeeee.......eeeeee......eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee...........ee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f C 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      


Chain D from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0fd1 D:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0fd2 D:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fD01 D:245-311 Endo-alpha-sialidase; domain 1                   1v0fD02 D:312-423,D:509-756  [code=2.120.10.10, no name defined]                                                1v0fD03 D:424-508  [code=2.40.30.20, no name defined]                                1v0fD02 D:312-423,D:509-756  [code=2.120.10.10, no name defined]                                                                                                                                                                                        1v0fD04 D:757-910 Endosialidase, domain 4                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeee..eeee..eeeee........ee....eeeeee.......eeeeee......eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee..........eee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f D 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      


Chain E from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0fe1 E:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0fe2 E:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fE01 E:245-312 Endo-alpha-sialidase; domain 1                    1v0fE02 E:313-423,E:511-755  [code=2.120.10.10, no name defined]                                               1v0fE03 E:424-510  [code=2.40.30.20, no name defined]                                  1v0fE02 E:313-423,E:511-755  [code=2.120.10.10, no name defined]                                                                                                                                                                                     1v0fE04 E:756-910 Endosialidase, domain 4                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeeeeeeeee..eeeee........ee....eeeeee.......eeeeee......eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee...........ee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f E 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      


Chain F from PDB  Type:PROTEIN  Length:666
 aligned with FIBER_BPK1F | Q04830 from UniProtKB/Swiss-Prot  Length:1064

    Alignment length:666
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904      
          FIBER_BPK1F   245 GAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
               SCOP domains d1v0ff1 F:245-760 Endo-alpha-sialidase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              d1v0ff2 F:761-910 Endo-alpha-sialidase                                                                                                                 SCOP domains
               CATH domains 1v0fF01 F:245-310 Endo-alpha-sialidase; domain 1                  1v0fF02 F:311-424,F:506-756  [code=2.120.10.10, no name defined]                                                  1v0fF03 F:425-505  [code=2.40.30.20, no name defined]                            1v0fF02 F:311-424,F:506-756  [code=2.120.10.10, no name defined]                                                                                                                                                                                           1v0fF04 F:757-910 Endosialidase, domain 4                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh.....ee....eeee....hhh.ee..eeee.......eeee......eeeee......eee......eee..eeeeeeeee........eeeeeee..........ee..........eeee...eeee..eeeeeeeeee.....eeeeeeeeee...eeeee..eee.....eeeee..........eeeee........eeee..eeee..eeeee........ee....eeeeee.......eeeeee......eeeeeee.....eeeeeee......eeeeeee..........eeee.hhhhh..eeeeeeeee..eeeeeeee........eeeee.......eeee...........eeee..eeeeeee.....................eeeeeeee...........eeeee............eeeeeeee..eeeeeeee.........................eeeeeeee...........ee..........ee.....eee...eee...eee..eee........eeeeee...eeeeee.....hhhh.eeeee.....hhhh..eeeee........eeeee..eeeee...eee..................ee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1v0f F 245 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRVSRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT 910
                                   254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (4, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: 6 Propellor (215)
(-)
Topology: Neuraminidase (215)
(-)
Homologous Superfamily: [code=2.120.10.10, no name defined] (150)
(-)
Coliphage k1f. Organism_taxid: 344021. (2)
3a1v0fF02F:311-424,F:506-756
3b1v0fB02B:312-423,B:509-756
3c1v0fD02D:312-423,D:509-756
3d1v0fC02C:313-423,C:511-755
3e1v0fE02E:313-423,E:511-755
3f1v0fA02A:313-424,A:507-755
(-)
Architecture: Beta Barrel (4804)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1V0F)

(-) Gene Ontology  (4, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FIBER_BPK1F | Q04830)
molecular function
    GO:0016996    endo-alpha-(2,8)-sialidase activity    Catalysis of the endohydrolysis of (2->8)-alpha-sialosyl linkages in oligo- or poly(sialic) acids.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  FIBER_BPK1F | Q04830
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  3.2.1.129
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIBER_BPK1F | Q04830: 1v0e 3gvj 3gvk 3gvl 3gw6 3ju4

(-) Related Entries Specified in the PDB File

1v0e ENDOSIALIDASE OF BACTERIOPHAGE K1F