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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL LENGTH CENTAURIN ALPHA-1 BOUND WITH THE FHA DOMAIN OF KIF13B (CAPRI TARGET)
 
Authors :  L. Shen, Y. Tong, W. Tempel, F. Mackenzie, C. H. Arrowsmith, A. M. Edward C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date :  19 Dec 08  (Deposition) - 25 Aug 09  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Kinesin, Gap, Gtpase Activation, Structural Genomics Consortium, Sgc, Atp-Binding, Cytoskeleton, Microtubule, Motor Protein, Nucleotide- Binding, Phosphoprotein, Metal-Binding, Nucleus, Zinc-Finger, Metal Binding Protein, Transport Protein-Hydrolase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Tong, W. Tempel, H. Wang, K. Yamada, L. Shen, G. A. Senisterra, F. Mackenzie, A. H. Chishti, H. W. Park
Phosphorylation-Independent Dual-Site Binding Of The Fha Domain Of Kif13 Mediates Phosphoinositide Transport Via Centaurin Alpha1.
Proc. Natl. Acad. Sci. Usa V. 107 20346 2010
PubMed-ID: 21057110  |  Reference-DOI: 10.1073/PNAS.1009008107

(-) Compounds

Molecule 1 - KINESIN-LIKE PROTEIN KIF13B
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21-CODONPLUS(DE3)-RIL
    Expression System Taxid562
    FragmentFHA DOMAIN
    GeneKIF13B, GAKIN, KIAA0639
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymKINESIN-LIKE PROTEIN GAKIN
 
Molecule 2 - CENTAURIN-ALPHA-1
    ChainsC, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21-CODONPLUS(DE3)-RIL
    Expression System Taxid562
    GeneCENTA1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPUTATIVE MAPK-ACTIVATING PROTEIN PM25

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A C 
Biological Unit 2 (1x) B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 27)

Asymmetric Unit (3, 27)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
2UNX22Ligand/IonUNKNOWN ATOM OR ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2UNX9Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 15)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
2UNX13Ligand/IonUNKNOWN ATOM OR ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:21 , CYS C:24 , CYS C:41 , CYS C:44BINDING SITE FOR RESIDUE ZN C 401
2AC2SOFTWARELYS C:3 , GLU C:4 , ARG C:5 , ARG C:6 , TRP C:65 , ARG C:156BINDING SITE FOR RESIDUE SO4 C 375
3AC3SOFTWARECYS D:21 , CYS D:24 , CYS D:41 , CYS D:44BINDING SITE FOR RESIDUE ZN D 401
4AC4SOFTWAREHIS D:193 , GLU D:213 , ASP D:214 , GLY D:215 , HOH D:422 , HOH D:434BINDING SITE FOR RESIDUE SO4 D 375
5AC5SOFTWARELYS D:261 , ARG D:273 , TYR D:284 , ARG D:294BINDING SITE FOR RESIDUE SO4 D 376

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FM8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FM8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047470G241SADAP1_HUMANPolymorphism10256887C/DS241S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047470G241SADAP1_HUMANPolymorphism10256887CS241S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_047470G241SADAP1_HUMANPolymorphism10256887DS241S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARFGAPPS50115 ARF GTPase-activating proteins domain profile.ADAP1_HUMAN7-126
 
  2C:7-126
D:7-126
2PH_DOMAINPS50003 PH domain profile.ADAP1_HUMAN129-230
 
252-356
 
  4C:129-230
D:129-230
C:252-356
D:252-356
Biological Unit 1 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARFGAPPS50115 ARF GTPase-activating proteins domain profile.ADAP1_HUMAN7-126
 
  1C:7-126
-
2PH_DOMAINPS50003 PH domain profile.ADAP1_HUMAN129-230
 
252-356
 
  2C:129-230
-
C:252-356
-
Biological Unit 2 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARFGAPPS50115 ARF GTPase-activating proteins domain profile.ADAP1_HUMAN7-126
 
  1-
D:7-126
2PH_DOMAINPS50003 PH domain profile.ADAP1_HUMAN129-230
 
252-356
 
  2-
D:129-230
-
D:252-356

(-) Exons   (0, 0)

(no "Exon" information available for 3FM8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:98
 aligned with KI13B_HUMAN | Q9NQT8 from UniProtKB/Swiss-Prot  Length:1826

    Alignment length:98
                                   457       467       477       487       497       507       517       527       537        
          KI13B_HUMAN   448 CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 545
               SCOP domains d3fm8a_ A: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eee...eeeee......ee..........eeeee.....eeeee.....eee..ee....eee....eeee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3fm8 A 448 CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 545
                                   457       467       477       487       497       507       517       527       537        

Chain B from PDB  Type:PROTEIN  Length:95
 aligned with KI13B_HUMAN | Q9NQT8 from UniProtKB/Swiss-Prot  Length:1826

    Alignment length:98
                                   457       467       477       487       497       507       517       527       537        
          KI13B_HUMAN   448 CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 545
               SCOP domains d3fm8b_ B: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...........eee...eeeee......ee..........eeee...---.eeee.....eee..ee....ee.....eeee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3fm8 B 448 CFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITS---VMLTPQKNTRTFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 545
                                   457       467       477       487       497 |   | 507       517       527       537        
                                                                             499 503                                          

Chain C from PDB  Type:PROTEIN  Length:364
 aligned with ADAP1_HUMAN | O75689 from UniProtKB/Swiss-Prot  Length:374

    Alignment length:383
                                         1                                                                                                                                                                                                                                                                                                                                                                                 
                                     -   |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367   
          ADAP1_HUMAN     - -------------MAKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGAGDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAVEAHF 370
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh.................eee....eeehhhhhhhhhh......eee......hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeeeeee......eeeeeeeee....eeee...----...eeee...eeeeehhhhhh....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.....eeeeee.--------..eeeeeee..eeeee.........eeee........eeee...-------..eeeeee....eeeeee.hhhhhhhhhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------ARFGAP  PDB: C:7-126 UniProt: 7-126                                                                                     --PH_DOMAIN  PDB: C:129-230 UniProt: 129-230                                                            ---------------------PH_DOMAIN  PDB: C:252-356 UniProt: 252-356                                                               -------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fm8 C -12 HHSSGRENLYFQGMAKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNR----EPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEK--------FRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFP-------WPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAVEAHF 370
                                    -3         7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       | -  |    177       187       197       207       217       227       237       247       257   |     -  |    277       287       297       307     |   -   |   327       337       347       357       367   
                                                                                                                                                                                                           165  170                                                                                        261      270                                        313     321                                                 

Chain D from PDB  Type:PROTEIN  Length:353
 aligned with ADAP1_HUMAN | O75689 from UniProtKB/Swiss-Prot  Length:374

    Alignment length:362
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364  
          ADAP1_HUMAN     5 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGAGDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAV 366
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.................eee....eeehhhhhhhhh.......eee......hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh.....hhhhhhhhh..eeeeeeeee......eeeeeeeee....eeee...----...eeee.hhheeeehhhhhh....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......eeeee...-----.eeeeeeee..eeeee.........eeee..hhhhh.eeee............eeeeee....eeeeee.hhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --ARFGAP  PDB: D:7-126 UniProt: 7-126                                                                                     --PH_DOMAIN  PDB: D:129-230 UniProt: 129-230                                                            ---------------------PH_DOMAIN  PDB: D:252-356 UniProt: 252-356                                                               ---------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fm8 D   5 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNR----EPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGP-----FRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYAV 366
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164|    | 174       184       194       204       214       224       234       244       254       264     | 274       284       294       304       314       324       334       344       354       364  
                                                                                                                                                                                          165  170                                                                                           264   270                                                                                                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FM8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FM8)

(-) Gene Ontology  (31, 33)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (KI13B_HUMAN | Q9NQT8)
molecular function
    GO:0071889    14-3-3 protein binding    Interacting selectively and non-covalently with a 14-3-3 protein. A 14-3-3 protein is any of a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimers within all eukaryotic cells, and have been implicated in the modulation of distinct biological processes by binding to specific phosphorylated sites on diverse target proteins, thereby forcing conformational changes or influencing interactions between their targets and other molecules. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
    GO:0042110    T cell activation    The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0030705    cytoskeleton-dependent intracellular transport    The directed movement of substances along cytoskeletal fibers such as microfilaments or microtubules within a cell.
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0006605    protein targeting    The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
    GO:0050770    regulation of axonogenesis    Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005871    kinesin complex    Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0005902    microvillus    Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells.
    GO:0033270    paranode region of axon    An axon part that is located adjacent to the nodes of Ranvier and surrounded by lateral loop portions of myelin sheath.

Chain C,D   (ADAP1_HUMAN | O75689)
molecular function
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0043533    inositol 1,3,4,5 tetrakisphosphate binding    Interacting selectively and non-covalently with inositol 1,3,4,5 tetrakisphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0043087    regulation of GTPase activity    Any process that modulates the rate of GTP hydrolysis by a GTPase.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  3fm8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ADAP1_HUMAN | O756893feh 3lju 3mdb
        KI13B_HUMAN | Q9NQT82cow 3gbj 3mdb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3FM8)