Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE MOTOR DOMAIN OF KINESIN KIF13B BOUND WITH ADP
 
Authors :  Y. Tong, L. Shen, Y. Shen, W. Tempel, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date :  19 Feb 09  (Deposition) - 03 Mar 09  (Release) - 19 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Kinesin, Motor Domain, Adp, Structural Genomics, Structural Genomics Consortium, Sgc, Atp-Binding, Microtubule, Motor Protein, Nucleotide-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tong, L. Shen, Y. Shen, W. Tempel, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Motor Domain Of Kinesin Kif13B Bound With Adp
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - KIF13B PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-LIC-CHIS
    Expression System Strain: BL21-DE3-V2R PRARE2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 4-351
    Gene: KIF13B
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1ADP3Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
3UNX5Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3UNX2Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3UNX2Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3UNX1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:13 , PRO A:14 , SER A:64 , GLN A:104 , THR A:105 , GLY A:106 , SER A:107 , GLY A:108 , LYS A:109 , SER A:110 , TYR A:111 , HOH A:362 , HOH A:364 , HOH A:366 , HOH A:383 , MG A:2000BINDING SITE FOR RESIDUE ADP A2001
02AC2SOFTWARESER A:110 , HOH A:362 , HOH A:363 , HOH A:364 , HOH A:394 , ADP A:2001BINDING SITE FOR RESIDUE MG A2000
03AC3SOFTWAREASN A:155BINDING SITE FOR RESIDUE UNX A 1
04AC4SOFTWAREGLN A:104 , VAL A:330 , SER A:331 , THR A:340 , HOH A:380BINDING SITE FOR RESIDUE UNX A 358
05AC5SOFTWAREARG B:13 , PRO B:14 , GLN B:104 , THR B:105 , GLY B:106 , SER B:107 , GLY B:108 , LYS B:109 , SER B:110 , TYR B:111 , HOH B:359 , HOH B:360 , HOH B:361 , HOH B:379 , HOH B:397 , HOH B:409 , MG B:2000BINDING SITE FOR RESIDUE ADP B2001
06AC6SOFTWARESER B:110 , HOH B:359 , HOH B:360 , HOH B:361 , HOH B:362 , ADP B:2001BINDING SITE FOR RESIDUE MG B2000
07AC7SOFTWAREGLN B:104 , VAL B:330 , SER B:331 , THR B:340 , HOH B:393BINDING SITE FOR RESIDUE UNX B 2
08AC8SOFTWARETYR B:346 , ARG B:349BINDING SITE FOR RESIDUE UNX B 358
09AC9SOFTWAREHOH C:2 , ARG C:11 , ARG C:13 , PRO C:14 , SER C:64 , GLN C:104 , THR C:105 , GLY C:106 , SER C:107 , GLY C:108 , LYS C:109 , SER C:110 , TYR C:111 , HOH C:359 , HOH C:362 , HOH C:384 , MG C:2000BINDING SITE FOR RESIDUE ADP C2001
10BC1SOFTWAREHOH C:1 , HOH C:2 , SER C:110 , HOH C:358 , HOH C:359 , ADP C:2001BINDING SITE FOR RESIDUE MG C2000
11BC2SOFTWAREGLN C:104 , VAL C:330 , SER C:331 , THR C:340 , HOH C:370BINDING SITE FOR RESIDUE UNX C 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GBJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GBJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GBJ)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KINESIN_MOTOR_2PS50067 Kinesin motor domain profile.KI13B_HUMAN5-353
 
 		  3A:5-351
B:5-351
C:5-351
2KINESIN_MOTOR_1PS00411 Kinesin motor domain signature.KI13B_HUMAN247-258
 
 		  3A:247-258
B:247-258
C:247-258
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KINESIN_MOTOR_2PS50067 Kinesin motor domain profile.KI13B_HUMAN5-353
 
 		  1A:5-351
-
-
2KINESIN_MOTOR_1PS00411 Kinesin motor domain signature.KI13B_HUMAN247-258
 
 		  1A:247-258
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KINESIN_MOTOR_2PS50067 Kinesin motor domain profile.KI13B_HUMAN5-353
 
 		  1-
B:5-351
-
2KINESIN_MOTOR_1PS00411 Kinesin motor domain signature.KI13B_HUMAN247-258
 
 		  1-
B:247-258
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KINESIN_MOTOR_2PS50067 Kinesin motor domain profile.KI13B_HUMAN5-353
 
 		  1-
-
C:5-351
2KINESIN_MOTOR_1PS00411 Kinesin motor domain signature.KI13B_HUMAN247-258
 
 		  1-
-
C:247-258

(-) Exons   (0, 0)

(no "Exon" information available for 3GBJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
 aligned with A0JLQ2_HUMAN | A0JLQ2 from UniProtKB/TrEMBL  Length:554

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
         A0JLQ2_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbja_ A: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjA00 A:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhh....eeee..eeee...-----------..eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee...------.....------........eee.hhhhhhhhhhhhhhh.----------....eeeeeeeeeeeee.....eeeeeeeeeeeee...........------hhhhhhhhhhhhhhhhhhhhhhh------....hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj A   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-----------QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD------TLKVR------PYVDGLSKLAVTSYKDIESLMSEGNKSR----------SSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTG------KEGSNINKSLTTLGLVISALADQ------NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -       |54        64        74        84        94       104       114       124       134       144       154        |-     | 174      |184       194       204   |     -    |  224       234       244       254       264      |274       284        |-     | 304       314       324       334       344       
                                                              40          52                                                                                                            163    170 174    181                        208        219                                          264    271                   293    300                                                   


Chain A from PDB  Type:PROTEIN  Length:302
 aligned with KI13B_HUMAN | Q9NQT8 from UniProtKB/Swiss-Prot  Length:1826

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
          KI13B_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbja_ A: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjA00 A:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhh....eeee..eeee...-----------..eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee...------.....------........eee.hhhhhhhhhhhhhhh.----------....eeeeeeeeeeeee.....eeeeeeeeeeeee...........------hhhhhhhhhhhhhhhhhhhhhhh------....hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) KINESIN_MOTOR_2  PDB: A:5-351 UniProt: 5-353                                                                                                                                                                                                                                                                                                                PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KINESIN_MOTO--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj A   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-----------QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD------TLKVR------PYVDGLSKLAVTSYKDIESLMSEGNKSR----------SSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTG------KEGSNINKSLTTLGLVISALADQ------NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -       |54        64        74        84        94       104       114       124       134       144       154        |-     | 174      |184       194       204   |     -    |  224       234       244       254       264      |274       284        |-     | 304       314       324       334       344       
                                                              40          52                                                                                                            163    170 174    181                        208        219                                          264    271                   293    300                                                   


Chain B from PDB  Type:PROTEIN  Length:298
 aligned with A0JLQ2_HUMAN | A0JLQ2 from UniProtKB/TrEMBL  Length:554

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
         A0JLQ2_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbjb_ B: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjB00 B:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhh.....eeee..eeee...----------...eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee............ee.......ee.....eee.hhhhhhhhhhhhhhhh----------....eeeeeeeeeeee.-------.eeeeeeeeee......-------------hhhhhhhhhhhhhhhhhhh---------...hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj B   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV----------GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR----------SSRSHAVFKITLTHTLY-------GEKVGKLSLVDLAGSER-------------GSNINKSLTTLGLVISALA---------KFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -      | 54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   |     -    |  224       234|      244       254    |    -       274       284      |  -      |304       314       324       334       344       
                                                              40         51                                                                                                                                                          208        219             235     243             259           273               291       301                                                  


Chain B from PDB  Type:PROTEIN  Length:298
 aligned with KI13B_HUMAN | Q9NQT8 from UniProtKB/Swiss-Prot  Length:1826

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
          KI13B_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbjb_ B: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjB00 B:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhh.....eeee..eeee...----------...eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee............ee.......ee.....eee.hhhhhhhhhhhhhhhh----------....eeeeeeeeeeee.-------.eeeeeeeeee......-------------hhhhhhhhhhhhhhhhhhh---------...hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) KINESIN_MOTOR_2  PDB: B:5-351 UniProt: 5-353                                                                                                                                                                                                                                                                                                                PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KINESIN_MOTO--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj B   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV----------GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR----------SSRSHAVFKITLTHTLY-------GEKVGKLSLVDLAGSER-------------GSNINKSLTTLGLVISALA---------KFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -      | 54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   |     -    |  224       234|      244       254    |    -       274       284      |  -      |304       314       324       334       344       
                                                              40         51                                                                                                                                                          208        219             235     243             259           273               291       301                                                  


Chain C from PDB  Type:PROTEIN  Length:294
 aligned with A0JLQ2_HUMAN | A0JLQ2 from UniProtKB/TrEMBL  Length:554

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
         A0JLQ2_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbjc_ C: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjC00 C:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhh.....eeee..eeee...-----------..eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeee....hhhhh...eeee...eeee.....ee..hhhhhhhhhhhhhhhh---------hhhhheeeeeeeeeeee------..eeeeeeeeeee......---------------hhhhhhhhhhhhhhhh------------.hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj C   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-----------QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR---------ESSRSHAVFKITLTHTL------TSGEKVGKLSLVDLAGSER---------------NINKSLTTLGLVISAL------------VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -       |54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   |     -   |   224       234      |244       254    |    -         -|      284     |   -       304       314       324       334       344       
                                                              40          52                                                                                                                                                         208       218             234    241               259             275            290          303                                                


Chain C from PDB  Type:PROTEIN  Length:294
 aligned with KI13B_HUMAN | Q9NQT8 from UniProtKB/Swiss-Prot  Length:1826

    Alignment length:347
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       
          KI13B_HUMAN     5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
               SCOP domains d3gbjc_ C: automated matches                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 3gbjC00 C:5-351 Kinesin                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhh.....eeee..eeee...-----------..eeee..eeee...........hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh......hhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeee....hhhhh...eeee...eeee.....ee..hhhhhhhhhhhhhhhh---------hhhhheeeeeeeeeeee------..eeeeeeeeeee......---------------hhhhhhhhhhhhhhhh------------.hhhhhhhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) KINESIN_MOTOR_2  PDB: C:5-351 UniProt: 5-353                                                                                                                                                                                                                                                                                                                PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KINESIN_MOTO--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gbj C   5 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-----------QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSR---------ESSRSHAVFKITLTHTL------TSGEKVGKLSLVDLAGSER---------------NINKSLTTLGLVISAL------------VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 351
                                    14        24        34     |   -       |54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   |     -   |   224       234      |244       254    |    -         -|      284     |   -       304       314       324       334       344       
                                                              40          52                                                                                                                                                         208       218             234    241               259             275            290          303
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GBJ)

(-) Gene Ontology  (23, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (A0JLQ2_HUMAN | A0JLQ2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
cellular component
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

Chain A,B,C   (KI13B_HUMAN | Q9NQT8)
molecular function
    GO:0071889    14-3-3 protein binding    Interacting selectively and non-covalently with a 14-3-3 protein. A 14-3-3 protein is any of a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimers within all eukaryotic cells, and have been implicated in the modulation of distinct biological processes by binding to specific phosphorylated sites on diverse target proteins, thereby forcing conformational changes or influencing interactions between their targets and other molecules. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
    GO:0042110    T cell activation    The change in morphology and behavior of a mature or immature T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.
    GO:0030705    cytoskeleton-dependent intracellular transport    The directed movement of substances along cytoskeletal fibers such as microfilaments or microtubules within a cell.
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0006605    protein targeting    The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
    GO:0050770    regulation of axonogenesis    Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005871    kinesin complex    Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0005902    microvillus    Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells.
    GO:0033270    paranode region of axon    An axon part that is located adjacent to the nodes of Ranvier and surrounded by lateral loop portions of myelin sheath.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ADP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3gbj)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3gbj
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0JLQ2_HUMAN | A0JLQ2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  KI13B_HUMAN | Q9NQT8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A0JLQ2_HUMAN | A0JLQ2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  KI13B_HUMAN | Q9NQT8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KI13B_HUMAN | Q9NQT8: 2cow 3fm8 3mdb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3GBJ)