Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF SULFOLOBUS SOLFATARICUS THIOREDOXIN REDUCTASE MUTANT C147A
 
Authors :  A. Ruggiero, M. Masullo, M. R. Ruocco, P. Arcari, A. Zagari, L. Vitagliano
Date :  12 Nov 08  (Deposition) - 13 Jan 09  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Redox Protein, Nucleotide Binding, Fad, Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ruggiero, M. Masullo, M. R. Ruocco, P. Grimaldi, M. A. Lanzotti, P. Arcari, A. Zagari, L. Vitagliano
Structure And Stability Of A Thioredoxin Reductase From Sulfolobus Solfataricus: A Thermostable Protein With Two Functions
Biochim. Biophys. Acta V. 1794 554 2009
PubMed-ID: 19110078  |  Reference-DOI: 10.1016/J.BBAPAP.2008.11.011
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOREDOXIN REDUCTASE (TRXB-3)
    Chains: A, B, C, D
    EC Number: 1.6.4.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO46Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3SO42Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY B:161 , HIS B:184 , ARG B:185 , HOH B:5393 , HOH B:5603BINDING SITE FOR RESIDUE ACY B1501
02AC2SOFTWAREGLY A:22 , LEU A:23 , GLY A:24 , PRO A:25 , ALA A:26 , GLY A:45 , GLU A:46 , THR A:47 , GLY A:50 , GLN A:51 , GLU A:54 , ALA A:55 , VAL A:58 , ASP A:60 , ASP A:90 , ILE A:91 , VAL A:92 , GLY A:120 , ILE A:121 , GLY A:122 , VAL A:123 , TYR A:143 , CYS A:144 , ALA A:147 , GLY A:286 , ASP A:287 , ARG A:296 , GLN A:297 , VAL A:298 , HOH A:5015 , HOH A:5023 , HOH A:5028 , HOH A:5046 , HOH A:5145 , HOH A:5636BINDING SITE FOR RESIDUE FAD A2001
03AC3SOFTWAREGLY B:22 , LEU B:23 , GLY B:24 , PRO B:25 , ALA B:26 , GLY B:45 , GLU B:46 , THR B:47 , GLY B:50 , GLN B:51 , GLU B:54 , ALA B:55 , ASP B:60 , ASP B:90 , ILE B:91 , VAL B:92 , GLY B:120 , ILE B:121 , GLY B:122 , TYR B:143 , ALA B:147 , GLY B:286 , ASP B:287 , ARG B:296 , GLN B:297 , VAL B:298 , HOH B:5021 , HOH B:5035 , HOH B:5041 , HOH B:5079 , HOH B:5224 , HOH B:5511BINDING SITE FOR RESIDUE FAD B2002
04AC4SOFTWAREGLY C:22 , LEU C:23 , GLY C:24 , PRO C:25 , ALA C:26 , GLY C:45 , GLU C:46 , THR C:47 , GLY C:50 , GLN C:51 , GLU C:54 , ALA C:55 , VAL C:58 , ASP C:60 , ASP C:90 , ILE C:91 , VAL C:92 , GLY C:120 , ILE C:121 , GLY C:122 , CYS C:144 , ALA C:147 , GLY C:286 , ASP C:287 , ARG C:296 , GLN C:297 , VAL C:298 , HOH C:5013 , HOH C:5064 , HOH C:5082 , HOH C:5084 , HOH C:5546BINDING SITE FOR RESIDUE FAD C2003
05AC5SOFTWAREGLY D:22 , LEU D:23 , GLY D:24 , PRO D:25 , ALA D:26 , GLY D:45 , GLU D:46 , THR D:47 , GLY D:50 , GLN D:51 , GLU D:54 , ALA D:55 , ASP D:60 , ASP D:90 , ILE D:91 , VAL D:92 , GLY D:120 , ILE D:121 , GLY D:122 , TYR D:143 , ALA D:147 , GLY D:286 , ASP D:287 , ARG D:296 , GLN D:297 , VAL D:298 , HOH D:5003 , HOH D:5056 , HOH D:5063 , HOH D:5076 , HOH D:5515BINDING SITE FOR RESIDUE FAD D2004
06AC6SOFTWAREGLY D:163 , ASP D:164 , SER D:165 , GLY D:248 , HOH D:5477BINDING SITE FOR RESIDUE SO4 D4162
07AC7SOFTWAREASP B:164 , SER B:165 , GLY B:248 , HOH B:5101 , HOH B:5481BINDING SITE FOR RESIDUE SO4 B4161
08AC8SOFTWAREHIS C:184 , ARG C:185 , LYS C:190 , LYS D:231BINDING SITE FOR RESIDUE SO4 C4163
09AC9SOFTWAREHIS A:184 , ARG A:185 , ARG A:186 , LYS A:190BINDING SITE FOR RESIDUE SO4 A4157
10BC1SOFTWAREHIS B:184 , ARG B:185 , ARG B:186 , LYS B:190 , HOH B:5603BINDING SITE FOR RESIDUE SO4 B4158
11BC2SOFTWAREARG A:126 , GLY A:163 , ASP A:164 , SER A:165 , GLY A:248 , HOH A:5133 , HOH A:5548BINDING SITE FOR RESIDUE SO4 A4159

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F8D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F8D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F8D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F8D)

(-) Exons   (0, 0)

(no "Exon" information available for 3F8D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
 aligned with Q8X236_SULSF | Q8X236 from UniProtKB/TrEMBL  Length:324

    Alignment length:311
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q8X236_SULSF    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKGQQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 320
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dA02 A:126-248  [code=3.50.50.60, no name defined]                                                                       ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhh....eee..eeeee..--.eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee.......-.hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d A  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENR--EFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-AQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89        |- |     109       119       129       139       149       159       169       179       189| |    198       208       218       228       238       248       258       268       278       288       298       308       318 
                                                                                                                   98  |                                                                                      190 |                                                                                                                                
                                                                                                                     101                                                                                        191                                                                                                                                


Chain A from PDB  Type:PROTEIN  Length:308
 aligned with Q97W27_SULSO | Q97W27 from UniProtKB/TrEMBL  Length:323

    Alignment length:310
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
         Q97W27_SULSO    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dA02 A:126-248  [code=3.50.50.60, no name defined]                                                                      ----------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhh....eee..eeeee..--.eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee........hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d A  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENR--EFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89        |- |     109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
                                                                                                                   98  |                                                                                                                                                                                                                          
                                                                                                                     101                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:309
 aligned with Q8X236_SULSF | Q8X236 from UniProtKB/TrEMBL  Length:324

    Alignment length:311
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q8X236_SULSF    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKGQQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 320
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dB02 B:126-248  [code=3.50.50.60, no name defined]                                                                       ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhhh...eee..eeeeee.-..eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhh...eeeee.......-.hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d B  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENR-DEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-AQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89        |-|      109       119       129       139       149       159       169       179       189| |    198       208       218       228       238       248       258       268       278       288       298       308       318 
                                                                                                                   98 |                                                                                       190 |                                                                                                                                
                                                                                                                    100                                                                                         191                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:309
 aligned with Q97W27_SULSO | Q97W27 from UniProtKB/TrEMBL  Length:323

    Alignment length:310
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
         Q97W27_SULSO    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dB02 B:126-248  [code=3.50.50.60, no name defined]                                                                      ----------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhhh...eee..eeeeee.-..eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhh...eeeee........hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d B  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENR-DEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89        |-|      109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
                                                                                                                   98 |                                                                                                                                                                                                                           
                                                                                                                    100                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:307
 aligned with Q8X236_SULSF | Q8X236 from UniProtKB/TrEMBL  Length:324

    Alignment length:311
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q8X236_SULSF    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKGQQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 320
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dC02 C:126-248  [code=3.50.50.60, no name defined]                                                                       ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhh....eee..eeeee.---.eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee.......-.hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d C  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIEN---EFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-AQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89       | - |     109       119       129       139       149       159       169       179       189| |    198       208       218       228       238       248       258       268       278       288       298       308       318 
                                                                                                                  97 101                                                                                      190 |                                                                                                                                
                                                                                                                                                                                                                191                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:307
 aligned with Q97W27_SULSO | Q97W27 from UniProtKB/TrEMBL  Length:323

    Alignment length:310
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
         Q97W27_SULSO    10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------3f8dC02 C:126-248  [code=3.50.50.60, no name defined]                                                                      ----------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhh....eee..eeeee.---.eeeee....eeeeeeeee....ee...............ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.eeeee........hhhhhhhhhh...eeee..eeeeeeee...eeeeeeee.....eeeee..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d C  10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIEN---EFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK 319
                                    19        29        39        49        59        69        79        89       | - |     109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319
                                                                                                                  97 101                                                                                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:298
 aligned with Q8X236_SULSF | Q8X236 from UniProtKB/TrEMBL  Length:324

    Alignment length:307
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       
         Q8X236_SULSF    13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKGQQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTE 319
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------3f8dD02 D:126-248  [code=3.50.50.60, no name defined]                                                                       ---------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhhh...eee..eeeeee....eeeee....eeeeeeeee....ee......hhhhhh...ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhh...eeeeee......-.hhhhhhhhhh...eeeee.eeeeeeee...eeeeeeee..--------..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f8d D  13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFK-AQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLK--------VNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTE 318
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       191       201       211       221       231       241       251       261       271       281       291       301       311       
                                                                                                                                                                                                           190 |                                     231      240                                                                              
                                                                                                                                                                                                             191                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:298
 aligned with Q97W27_SULSO | Q97W27 from UniProtKB/TrEMBL  Length:323

    Alignment length:306
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312      
         Q97W27_SULSO    13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTE 318
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -----------------------------------------------------------------------------------------------------------------3f8dD02 D:126-248  [code=3.50.50.60, no name defined]                                                                      ---------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhh.ee........eehhhhhhhhhhhhhhh...eee..eeeeee....eeeee....eeeeeeeee....ee......hhhhhh...ee.hhhhhhhhhh..eeeee..hhhhhhhhhhhhh...eeeeee.......hhhhhhhhhh...eeeee.eeeeeeee...eeeeeeee..--------..eeee...ee.hhhhhhhh......................eee............hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3f8d D  13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLK--------VNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTE 318
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        |-       242       252       262       272       282       292       302       312      
                                                                                                                                                                                                                                                    231      240
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F8D)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F8D)

(-) Gene Ontology  (7, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8X236_SULSF | Q8X236)
molecular function
    GO:0003954    NADH dehydrogenase activity    Catalysis of the reaction: NADH + H+ + acceptor = NAD+ + reduced acceptor.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004791    thioredoxin-disulfide reductase activity    Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019430    removal of superoxide radicals    Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A,B,C,D   (Q97W27_SULSO | Q97W27)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004791    thioredoxin-disulfide reductase activity    Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019430    removal of superoxide radicals    Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3f8d)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3f8d
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8X236_SULSF | Q8X236
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q97W27_SULSO | Q97W27
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.6.4.5
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8X236_SULSF | Q8X236
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q97W27_SULSO | Q97W27
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q97W27_SULSO | Q97W27: 3f8p 3f8r
UniProtKB/TrEMBL
        Q8X236_SULSF | Q8X236: 3f8p 3f8r

(-) Related Entries Specified in the PDB File

3f8p WILD-TYPE SSTRXRB3 IN COMPLEX WITH NAD
3f8r WILD-TYPE SSTRXRB3 IN COMPLEX WITH NAP