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(-) Description

Title :  STRUCTURE OF THE 3ALPHAM13 HIGH-AFFINITY MUTANT OF THE 2C TCR IN COMPLEX WITH LD/QL9
 
Authors :  L. A. Colf, K. C. Garcia
Date :  07 Aug 08  (Deposition) - 04 Nov 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f
Biol. Unit 1:  A,D,E,Q  (1x)
Biol. Unit 2:  B,C,F,G  (1x)
Biol. Unit 3:  c,d,e,f  (1x)
Biol. Unit 4:  H,I,J,K  (1x)
Biol. Unit 5:  L,M,N,O  (1x)
Biol. Unit 6:  P,R,S,T  (1x)
Biol. Unit 7:  U,V,W,X  (1x)
Biol. Unit 8:  Y,Z,a,b  (1x)
Keywords :  Tcr, Mhc, High Affinity, Cross Reactivity, Glycoprotein, Immune Response, Membrane, Mhc I, Phosphoprotein, Transmembrane, Immunoglobulin Domain, Receptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. L. Jones, L. A. Colf, J. D. Stone, K. C. Garcia, D. M. Kranz
Distinct Cdr3 Conformations In Tcrs Determine The Level Of Cross-Reactivity For Diverse Antigens, But Not The Docking Orientation.
J. Immunol. V. 181 6255 2008
PubMed-ID: 18941216
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, L-D ALPHA CHAIN
    Chains: A, B, c, H, L, P, U, Y
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET28A
    Fragment: UNP RESIDUES 25-199
    Gene: H2-L
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - QL9 PEPTIDE
    Chains: Q, G, f, K, O, T, X, b
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN MOUSE
    Synthetic: YES
 
Molecule 3 - T-CELL RECEPTOR ALPHA CHAIN V REGION PHDS58
    Chains: D, C, d, I, M, R, V, Z
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET22B
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - TCR BETA CHAIN
    Chains: E, F, e, J, N, S, W, a
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET22B
    Mutation: YES
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223242526272829303132
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef
Biological Unit 1 (1x): A  DE           Q               
Biological Unit 2 (1x):  BC  FG                         
Biological Unit 3 (1x):                             cdef
Biological Unit 4 (1x):        HIJK                     
Biological Unit 5 (1x):            LMNO                 
Biological Unit 6 (1x):                P RST            
Biological Unit 7 (1x):                     UVWX        
Biological Unit 8 (1x):                         YZab    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3E3Q)

(-) Sites  (0, 0)

(no "Site" information available for 3E3Q)

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1a:23 -a:92
2A:101 -A:164
3B:101 -B:164
4C:22 -C:90
5c:101 -c:164
6D:22 -D:90
7d:22 -d:90
8e:23 -e:92
9E:23 -E:92
10F:23 -F:92
11H:101 -H:164
12I:22 -I:90
13J:23 -J:92
14L:101 -L:164
15M:22 -M:90
16N:23 -N:92
17P:101 -P:164
18R:22 -R:90
19S:23 -S:92
20U:101 -U:164
21V:22 -V:90
22W:23 -W:92
23Y:101 -Y:164
24Z:22 -Z:90

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Pro D:101 -Pro D:102
2Ser E:7 -Pro E:8
3Pro C:101 -Pro C:102
4Ser F:7 -Pro F:8
5Pro d:101 -Pro d:102
6Ser e:7 -Pro e:8
7Pro I:101 -Pro I:102
8Ser J:7 -Pro J:8
9Pro M:101 -Pro M:102
10Ser N:7 -Pro N:8
11Pro R:101 -Pro R:102
12Ser S:7 -Pro S:8
13Pro V:101 -Pro V:102
14Ser W:7 -Pro W:8
15Pro Z:101 -Pro Z:102
16Ser a:7 -Pro a:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E3Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E3Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3E3Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qA00 A:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q A   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain B from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qB00 B:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q B   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains d3e3qc_ C: automated matches                                                                                  SCOP domains
               CATH domains 3e3qC00 C:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q C   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains d3e3qc_ C: automated matches                                                                                  SCOP domains
               CATH domains 3e3qC00 C:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q C   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain D from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qD00 D:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eee.....eeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q D   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain D from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qD00 D:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eee.....eeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q D   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain E from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qe_ E: automated matches                                                                                    SCOP domains
               CATH domains 3e3qE00 E:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q E   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain F from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qf_ F: automated matches                                                                                    SCOP domains
               CATH domains 3e3qF00 F:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q F   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain G from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q G   1 QLSPFPFDL   9


Chain H from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qH00 H:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q H   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain I from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qI00 I:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q I   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain I from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qI00 I:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q I   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain J from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qj_ J: automated matches                                                                                    SCOP domains
               CATH domains 3e3qJ00 J:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.......eeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q J   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain K from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q K   1 QLSPFPFDL   9


Chain L from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qL00 L:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q L   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain M from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qM00 M:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eee....eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q M   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain M from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qM00 M:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eee....eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q M   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain N from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qn_ N: automated matches                                                                                    SCOP domains
               CATH domains 3e3qN00 N:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q N   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain O from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q O   1 QLSPFPFDL   9


Chain P from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qP00 P:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q P   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain Q from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q Q   1 QLSPFPFDL   9


Chain R from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qR00 R:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q R   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain R from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qR00 R:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q R   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain S from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qs_ S: automated matches                                                                                    SCOP domains
               CATH domains 3e3qS00 S:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q S   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain T from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q T   1 QLSPFPFDL   9


Chain U from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qU00 U:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q U   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain V from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qV00 V:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q V   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain V from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qV00 V:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeee.....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q V   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain W from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qw_ W: automated matches                                                                                    SCOP domains
               CATH domains 3e3qW00 W:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q W   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain X from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q X   1 QLSPFPFDL   9


Chain Y from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qY00 Y:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q Y   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain Z from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qZ00 Z:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q Z   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain Z from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qZ00 Z:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q Z   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain a from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains d3e3qa_ a: automated matches                                                                                    SCOP domains
               CATH domains 3e3qa00 a:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q a   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain b from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q b   1 QLSPFPFDL   9


Chain c from PDB  Type:PROTEIN  Length:175
 aligned with HA1L_MOUSE | P01897 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:175
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194     
           HA1L_MOUSE    25 GPHSMRYFETAVSRPGLGEPRYISVGYVDNKEFVRFDSDAENPRYEPQAPWMEQEGPEYWERITQIAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQWMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 199
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qc00 c:1-175 Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......eeeeeeee..eeeeeee.......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee.....eeeeeeeeee..eeeeee......eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q c   1 GPHSMRYYETATSRRGLGEPRYTSVGYVDDKEFVRFDSDAENPRYEPQVPWMEQEGPEYWERITQVAKGQEQWFRVNLRTLLGYYNQSAGGTHTLQRMYGCDVGSDGRLLRGYEQFAYDGCDYIALNEDLRTWTAADMAAQITRRKWEQAGAAEYYRAYLEGECVEWLHRYLKNG 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     


Chain d from PDB  Type:PROTEIN  Length:109
 aligned with Q5R1C2_MOUSE | Q5R1C2 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                                                                                                     113                 
                                    31        41        51        61        71        81        91       101       111 |       -         
         Q5R1C2_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS-----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qd00 d:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q d   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain d from PDB  Type:PROTEIN  Length:109
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:109
                                    31        41        51        61        71        81        91       101       111       121         
           TVA1_MOUSE    22 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL 130
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qd00 d:2-115 Immunoglobulins                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee....eee..ee.......eeeeee......eeeeee.....eeee...eeeeee....eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q d   2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHRSDSAVYFCAVSDPPPLLTFGSGTKVIVL 115
                                    11        21        31        41        51        61        71        81        91 ||    106         
                                                                                                                      93|                
                                                                                                                       99                


Chain e from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3e3qe00 e:1-118 Immunoglobulins                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeee......eeeeee......ee......eeee.....eeeeee...hhhhheeeeeeee.....ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3e3q e   1 EAAVTQSPRNKVAVTGEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLS 118
                                    10        20        30        40        50        60  ||    71        81        91      |107       117 
                                                                                         63|                               98|             
                                                                                          65                               105             


Chain f from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 3e3q f   1 QLSPFPFDL   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
Mouse (Mus musculus) (152)
2a3e3qE00E:1-118
2b3e3qF00F:1-118
2c3e3qJ00J:1-118
2d3e3qN00N:1-118
2e3e3qS00S:1-118
2f3e3qW00W:1-118
2g3e3qa00a:1-118
2h3e3qe00e:1-118
2i3e3qC00C:2-115
2j3e3qD00D:2-115
2k3e3qI00I:2-115
2l3e3qM00M:2-115
2m3e3qR00R:2-115
2n3e3qV00V:2-115
2o3e3qZ00Z:2-115
2p3e3qd00d:2-115

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E3Q)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,H,L,P,U,Y,c   (HA1L_MOUSE | P01897)
molecular function
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0002479    antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
    GO:0002474    antigen processing and presentation of peptide antigen via MHC class I    The process in which an antigen-presenting cell expresses a peptide antigen on its cell surface in association with an MHC class I protein complex. Class I here refers to classical class I molecules.
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
cellular component
    GO:0042612    MHC class I protein complex    A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules.
    GO:0071556    integral component of lumenal side of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030670    phagocytic vesicle membrane    The lipid bilayer surrounding a phagocytic vesicle.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C,D,I,M,R,V,Z,d   (Q5R1C2_MOUSE | Q5R1C2)

Chain C,D,I,M,R,V,Z,d   (TVA1_MOUSE | P01738)

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  3e3q
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  TVA1_MOUSE | P01738
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HA1L_MOUSE | P01897: 1ld9 1ldp 2e7l 2oi9 3e2h 3ery 3tf7 3tfk 3tjh 3tpu 3uo1 3uyr 3v4u 3v52 3vj6 4ms8 4mvb 4mxq 4n0c 4n5e 4nhu
        TVA1_MOUSE | P01738: 1g6r 1i9e 1mwa 1tcr 2ckb 2icw 2oi9 3e2h 4mvb 4mxq 4n0c 4n5e 4nhu

(-) Related Entries Specified in the PDB File

2e7l HIGH AFFINITY COMPLEX
2oi9 WILD-TYPE COMPLEX
3e2h HIGH AFFINITY COMPLEX