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3E3Q
Asym. Unit
Info
Asym.Unit (525 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (72 KB)
Biol.Unit 5 (73 KB)
Biol.Unit 6 (73 KB)
Biol.Unit 7 (73 KB)
Biol.Unit 8 (73 KB)
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(1)
Title
:
STRUCTURE OF THE 3ALPHAM13 HIGH-AFFINITY MUTANT OF THE 2C TCR IN COMPLEX WITH LD/QL9
Authors
:
L. A. Colf, K. C. Garcia
Date
:
07 Aug 08 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f
Biol. Unit 1: A,D,E,Q (1x)
Biol. Unit 2: B,C,F,G (1x)
Biol. Unit 3: c,d,e,f (1x)
Biol. Unit 4: H,I,J,K (1x)
Biol. Unit 5: L,M,N,O (1x)
Biol. Unit 6: P,R,S,T (1x)
Biol. Unit 7: U,V,W,X (1x)
Biol. Unit 8: Y,Z,a,b (1x)
Keywords
:
Tcr, Mhc, High Affinity, Cross Reactivity, Glycoprotein, Immune Response, Membrane, Mhc I, Phosphoprotein, Transmembrane, Immunoglobulin Domain, Receptor, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. L. Jones, L. A. Colf, J. D. Stone, K. C. Garcia, D. M. Kranz
Distinct Cdr3 Conformations In Tcrs Determine The Level Of Cross-Reactivity For Diverse Antigens, But Not The Docking Orientation.
J. Immunol. V. 181 6255 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3e3qa_ (a:)
1b: SCOP_d3e3qc_ (C:)
1c: SCOP_d3e3qe_ (E:)
1d: SCOP_d3e3qf_ (F:)
1e: SCOP_d3e3qj_ (J:)
1f: SCOP_d3e3qn_ (N:)
1g: SCOP_d3e3qs_ (S:)
1h: SCOP_d3e3qw_ (W:)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
automated matches
(311)
Mouse (Mus musculus) [TaxId: 10090]
(112)
1a
d3e3qa_
a:
1b
d3e3qc_
C:
1c
d3e3qe_
E:
1d
d3e3qf_
F:
1e
d3e3qj_
J:
1f
d3e3qn_
N:
1g
d3e3qs_
S:
1h
d3e3qw_
W:
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CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_3e3qA00 (A:1-175)
1b: CATH_3e3qB00 (B:1-175)
1c: CATH_3e3qH00 (H:1-175)
1d: CATH_3e3qL00 (L:1-175)
1e: CATH_3e3qP00 (P:1-175)
1f: CATH_3e3qU00 (U:1-175)
1g: CATH_3e3qY00 (Y:1-175)
1h: CATH_3e3qc00 (c:1-175)
2a: CATH_3e3qE00 (E:1-118)
2b: CATH_3e3qF00 (F:1-118)
2c: CATH_3e3qJ00 (J:1-118)
2d: CATH_3e3qN00 (N:1-118)
2e: CATH_3e3qS00 (S:1-118)
2f: CATH_3e3qW00 (W:1-118)
2g: CATH_3e3qa00 (a:1-118)
2h: CATH_3e3qe00 (e:1-118)
2i: CATH_3e3qC00 (C:2-115)
2j: CATH_3e3qD00 (D:2-115)
2k: CATH_3e3qI00 (I:2-115)
2l: CATH_3e3qM00 (M:2-115)
2m: CATH_3e3qR00 (R:2-115)
2n: CATH_3e3qV00 (V:2-115)
2o: CATH_3e3qZ00 (Z:2-115)
2p: CATH_3e3qd00 (d:2-115)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Mouse (Mus musculus)
(40)
1a
3e3qA00
A:1-175
1b
3e3qB00
B:1-175
1c
3e3qH00
H:1-175
1d
3e3qL00
L:1-175
1e
3e3qP00
P:1-175
1f
3e3qU00
U:1-175
1g
3e3qY00
Y:1-175
1h
3e3qc00
c:1-175
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
2a
3e3qE00
E:1-118
2b
3e3qF00
F:1-118
2c
3e3qJ00
J:1-118
2d
3e3qN00
N:1-118
2e
3e3qS00
S:1-118
2f
3e3qW00
W:1-118
2g
3e3qa00
a:1-118
2h
3e3qe00
e:1-118
2i
3e3qC00
C:2-115
2j
3e3qD00
D:2-115
2k
3e3qI00
I:2-115
2l
3e3qM00
M:2-115
2m
3e3qR00
R:2-115
2n
3e3qV00
V:2-115
2o
3e3qZ00
Z:2-115
2p
3e3qd00
d:2-115
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Show PDB file:
Asym.Unit (525 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
Biol.Unit 5 (73 KB)
Header - Biol.Unit 5
Biol.Unit 6 (73 KB)
Header - Biol.Unit 6
Biol.Unit 7 (73 KB)
Header - Biol.Unit 7
Biol.Unit 8 (73 KB)
Header - Biol.Unit 8
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