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(-) Description

Title :  MURINE T-CELL ANTIGEN RECEPTOR 2C CLONE
 
Authors :  K. C. Garcia, M. Degano, R. L. Stanfield, I. A. Wilson
Date :  12 Sep 96  (Deposition) - 12 Mar 97  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  T-Cell, Receptor, Transmembrane, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. C. Garcia, M. Degano, R. L. Stanfield, A. Brunmark, M. R. Jackson, P. A. Peterson, L. Teyton, I. A. Wilson
An Alphabeta T Cell Receptor Structure At 2. 5 A And Its Orientation In The Tcr-Mhc Complex.
Science V. 274 209 1996
PubMed-ID: 8824178  |  Reference-DOI: 10.1126/SCIENCE.274.5285.209

(-) Compounds

Molecule 1 - ALPHA, BETA T-CELL RECEPTOR (VB8.2DB2JB2.4CB2;VA3JA58CA)
    Cell: T-LYMPHOCYTES
    Chains: A
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Common: FRUIT FLY
    Expression System Taxid: 7227
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: TCR
 
Molecule 2 - ALPHA, BETA T-CELL RECEPTOR (VB8.2DB2JB2.4CB2;VA3JA58CA)
    Cell: T-LYMPHOCYTES
    Chains: B
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Common: FRUIT FLY
    Expression System Taxid: 7227
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: TCR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC2Ligand/IonALPHA-L-FUCOSE
3NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO43Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:203BINDING SITE FOR RESIDUE NAG A 200
02AC2SOFTWAREASN A:185 , NAG A:215 , FUC A:217BINDING SITE FOR RESIDUE NAG A 214
03AC3SOFTWARETHR A:29 , NAG A:214 , BMA A:216BINDING SITE FOR RESIDUE NAG A 215
04AC4SOFTWARETHR A:29 , NAG A:215BINDING SITE FOR RESIDUE BMA A 216
05AC5SOFTWARENAG A:214 , ARG B:150 , GLU B:181 , SER B:182 , SER B:189BINDING SITE FOR RESIDUE FUC A 217
06AC6SOFTWAREGLN B:213 , GLN B:215 , ASN B:236 , NAG B:249 , HOH B:261BINDING SITE FOR RESIDUE NAG B 248
07AC7SOFTWARETRP B:162 , NAG B:248BINDING SITE FOR RESIDUE NAG B 249
08AC8SOFTWARESER A:67 , ASN A:70 , NAG A:219 , FUC A:220BINDING SITE FOR RESIDUE NAG A 218
09AC9SOFTWARENAG A:218BINDING SITE FOR RESIDUE NAG A 219
10BC1SOFTWARENAG A:218BINDING SITE FOR RESIDUE FUC A 220
11BC2SOFTWAREPRO B:8 , ARG B:9 , ASN B:10 , HIS B:217BINDING SITE FOR RESIDUE SO4 B 250
12BC3SOFTWAREGLY B:165 , HIS B:209 , ARG B:211 , HOH B:259BINDING SITE FOR RESIDUE SO4 B 251
13BC4SOFTWAREHIS B:169 , SER B:170BINDING SITE FOR RESIDUE SO4 B 252

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:90
2A:141 -A:191
3B:23 -B:92
4B:147 -B:212

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser B:7 -Pro B:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TCR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TCR)

(-) Exons   (0, 0)

(no "Exon" information available for 1TCR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:202
                                                                                                                                       130                                                                                            
                                    30        40        50        60        70        80        90       100       110       120       130         -         -         -         -         -         -         -         -         -  
          TVA1_MOUSE     21 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL--------------------------------------------------------------------------------------------    -
               SCOP domains d1tcra1 A:1-117 T-cell antigen receptor                                                                         d1tcra2 A:118-213 T-cell antigen receptor                                                  SCOP domains
               CATH domains 1tcrA01 A:1-116 Immunoglobulins                                                                                1tcrA02 A:117-213 Immunoglobulins                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee....eee..........eeeeeee......eeeeee.....eee....eeeeee....eeeeee....hhh.eeeeeeee...........eeeeee........eeeeee.......eeeeee...............eee...eeee......eeeeeeeee......hhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1tcr A    1 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVLPYIQNPEPAVYALKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDATVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPC  213
                                    10        20        30        40        50        60        70        80        90  ||   105       115       125   ||  137       147       157       167       177       187       197||     211  
                                                                                                                       93|                           129|                                                               198|          
                                                                                                                        99                            132                                                                203          


Chain B from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                              
               SCOP domains d1tcrb1 B:1-117 T-cell antigen receptor                                                                        d1tcrb2 B:118-247 T-cell antigen receptor                                                                                      SCOP domains
               CATH domains --1tcrB01 B:3-117 Immunoglobulins                                                                              1tcrB02 B:118-246 Immunoglobulins                                                                                            - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.....eeeeeeee...eeeeeeee...............eee.......eeee....hhh.eeeeeeee....eee...eeeeee..hhh....eeeee...hhhhhhh.eeeeeeeeeee....eeeeeee........eee....eeee..eeeeeeeeeeehhhh.....eeeeeeee..................eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1tcr B    1 EAAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGGGGTLYFGAGTRLSVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC  247
                                    10        20        30        40        50        60  ||    71        81        91      |107      116A       126       136       146       156       166       176     ||190       200       210       220       230       240       
                                                                                         63|                               98|        116A                                                               182|||                                                          
                                                                                          65                               105                                                                            186||                                                          
                                                                                                                                                                                                           187|                                                          
                                                                                                                                                                                                            189
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TCR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1TCR)

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  1tcr
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  TVA1_MOUSE | P01738
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TVA1_MOUSE | P01738: 1g6r 1i9e 1mwa 2ckb 2icw 2oi9 3e2h 3e3q 4mvb 4mxq 4n0c 4n5e 4nhu

(-) Related Entries Specified in the PDB File

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