3DKU - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

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Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Biological Unit 11 (Jmol Viewer)

Biological Unit 12 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF NUDIX HYDROLASE ORF153, YMFB, FROM ESCHERICHIA COLI K-1

Authors :   M. K. Hong, J. K. Kim, J. H. Jung, J. W. Jung, J. Y. Choi, L. W. Kang

Date :   26 Jun 08 (Deposition) - 30 Jun 09 (Release) - 30 Jun 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.69

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: A,B  (1x)
Biol. Unit 10: C (1x),E (1x)
Biol. Unit 11: D,F  (1x)
Biol. Unit 12: G,H  (1x)

Keywords :   Nudix Hydrolase, Orf153, Ymfb, Nucleoside Triphosphatase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. K. Hong, J. K. Kim, J. H. Jung, J. W. Jung, J. Y. Choi, L. W. Kang
Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PUTATIVE PHOSPHOHYDROLASE
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	BL21(DE3)
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ESCHERICHIA COLI APEC O1
	Organism Taxid	:	405955

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:	A	B
Biological Unit 10 (1x)	:			C (1x)		E (1x)
Biological Unit 11 (1x)	:				D		F
Biological Unit 12 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3DKU)

(no "Site" information available for 3DKU)

(no "SS Bond" information available for 3DKU)

Asymmetric Unit

No.	Residues
1	Trp B:146	-	Pro B:147
2	Trp D:146	-	Pro D:147

(no "SAP(SNP)/Variant" information available for 3DKU)

Asymmetric Unit (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	8	A:3-131 B:3-131 C:3-131 D:3-131 E:3-131 F:3-131 G:3-131 H:3-131
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	8	A:36-57 B:36-57 C:36-57 D:36-57 E:36-57 F:36-57 G:36-57 H:36-57

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	A:3-131 - - - - - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	A:36-57 - - - - - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- B:3-131 - - - - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- B:36-57 - - - - - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - C:3-131 - - - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - C:36-57 - - - - -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - - D:3-131 - - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - - D:36-57 - - - -

Biological Unit 5 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - - - E:3-131 - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - - - E:36-57 - - -

Biological Unit 6 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - - - - F:3-131 - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - - - - F:36-57 - -

Biological Unit 7 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - - - - - G:3-131 -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - - - - - G:36-57 -

Biological Unit 8 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	1	- - - - - - - H:3-131
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	1	- - - - - - - H:36-57

Biological Unit 9 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	2	A:3-131 B:3-131 - - - - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	2	A:36-57 B:36-57 - - - - - -

Biological Unit 10 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	2	- - C:3-131 - E:3-131 - - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	2	- - C:36-57 - E:36-57 - - -

Biological Unit 11 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	2	- - - D:3-131 - F:3-131 - -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	2	- - - D:36-57 - F:36-57 - -

Biological Unit 12 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDJ_ECOK1	3-131	2	- - - - - - G:3-131 H:3-131
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDJ_ECOK1	36-57	2	- - - - - - G:36-57 H:36-57

(no "Exon" information available for 3DKU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:153
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI 153
               SCOP domains d3dkua_ A: automated matches                                                                                                                              SCOP domains
               CATH domains 3dkuA00 A:1-153 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee...............eeeeehhhhhhhh.....hhhhhhhhhhhhh...hhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: A:3-131 UniProt: 3-131                                                                                               ---------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: A:36-5------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku A   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:147
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWP 147
               SCOP domains d3dkub_ B: automated matches                                                                                                                        SCOP domains
               CATH domains 3dkuB00 B:1-147 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee.............eeeeeeehhhhhhhh.....hhhhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: B:3-131 UniProt: 3-131                                                                                               ---------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: B:36-5------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku B   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:153
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI 153
               SCOP domains d3dkuc_ C: automated matches                                                                                                                              SCOP domains
               CATH domains 3dkuC00 C:1-153 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee.............eeeeeeehhhhhhhh....hhhhhhhhhhhhh....hhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: C:3-131 UniProt: 3-131                                                                                               ---------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: C:36-5------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku C   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:148
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPF 148
               SCOP domains d3dkud_ D: automated matches                                                                                                                         SCOP domains
               CATH domains 3dkuD00 D:1-148 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee.............eeeeeeehhhhhhhh....hhhhhhhhhhhhh....hhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: D:3-131 UniProt: 3-131                                                                                               ----------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: D:36-5------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku D   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPF 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain E from PDB  Type:PROTEIN  Length:152
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGV 152
               SCOP domains d3dkue_ E: automated matches                                                                                                                             SCOP domains
               CATH domains 3dkuE00 E:1-152 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eee.eeeee..eeeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee.............eee..eehhhhhhh.....hhhhhhhhhhhhh....hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: E:3-131 UniProt: 3-131                                                                                               --------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: E:36-5----------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku E   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGV 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain F from PDB  Type:PROTEIN  Length:149
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFT 149
               SCOP domains d3dkuf_ F: automated matches                                                                                                                          SCOP domains
               CATH domains 3dkuF00 F:1-149 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee...............eeeeehhhhhhh......hhhhhhhhhhhh....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: F:3-131 UniProt: 3-131                                                                                               ------------------ PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: F:36-5-------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku F   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFT 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain G from PDB  Type:PROTEIN  Length:152
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGV 152
               SCOP domains d3dkug_ G: automated matches                                                                                                                             SCOP domains
               CATH domains 3dkuG00 G:1-152 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeeee..eeeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee.............eeeeeeehhhhhhh.....hhhhhhhhhhhhhh...hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: G:3-131 UniProt: 3-131                                                                                               --------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: G:36-5----------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku G   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGV 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain H from PDB  Type:PROTEIN  Length:147
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWP 147
               SCOP domains d3dkuh_ H: automated matches                                                                                                                        SCOP domains
               CATH domains 3dkuH00 H:1-147 Nucleoside Triphosphate Pyrophosphohydrolase                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee...............eeeeehhhhhhhh....hhhhhhhhhhhhhh...hhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: H:3-131 UniProt: 3-131                                                                                               ---------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: H:36-5------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dku H   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Nudix (141)

Superfamily: Nudix (141)

Family: automated matches (20)

Protein domain: automated matches (20)

Escherichia coli [TaxId: 405955] (2)

1a	d3dkua_	A:
1b	d3dkub_	B:
1c	d3dkuc_	C:
1d	d3dkud_	D:
1e	d3dkue_	E:
1f	d3dkuf_	F:
1g	d3dkug_	G:
1h	d3dkuh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Nucleoside Triphosphate Pyrophosphohydrolase (89)

Homologous Superfamily: Nucleoside Triphosphate Pyrophosphohydrolase (89)

Escherichia coli apec o1. Organism_taxid: 405955. Strain: o1:k1 / apec. (1)

1a	3dkuA00	A:1-153
1b	3dkuC00	C:1-153
1c	3dkuE00	E:1-152
1d	3dkuG00	G:1-152
1e	3dkuF00	F:1-149
1f	3dkuD00	D:1-148
1g	3dkuB00	B:1-147
1h	3dkuH00	H:1-147

(no "Pfam Domain" information available for 3DKU)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (NUDJ_ECOK1 | A1AA28)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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	Ligands, Modified Residues, Ions
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(no "Sites" information available for 3dku)

	Cis Peptide Bonds
		Trp B:146 - Pro B:147	[ RasMol ]
		Trp D:146 - Pro D:147	[ RasMol ]

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	3dku
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	NUDJ_ECOK1 \| A1AA28
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	NUDJ_ECOK1 \| A1AA28
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UniProtKB/Swiss-Prot
	NUDJ_ECOK1 \| A1AA28	:	3shd

(no "Related Entries Specified in the PDB File" available for 3DKU)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 16)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (1, 8)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File