3DKU - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF NUDIX HYDROLASE ORF153, YMFB, FROM ESCH COLI K-1
• Keywords: NUDIX HYDROLASE, ORF153, YMFB, NUCLEOSIDE TRIPHOSPHATASE, HY
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3DKU	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PUTATIVE PHOSPHOHYDROLASE	A	153	1227	0
2	Protein	PUTATIVE PHOSPHOHYDROLASE	B	147	1181	0
3	Protein	PUTATIVE PHOSPHOHYDROLASE	C	153	1227	0
4	Protein	PUTATIVE PHOSPHOHYDROLASE	D	148	1192	0
5	Protein	PUTATIVE PHOSPHOHYDROLASE	E	152	1219	0
6	Protein	PUTATIVE PHOSPHOHYDROLASE	F	149	1199	0
7	Protein	PUTATIVE PHOSPHOHYDROLASE	G	152	1219	0
8	Protein	PUTATIVE PHOSPHOHYDROLASE	H	147	1181	0
9	Water			155	0	155
total				1356	9645	155

Proteins

Unit 1	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148 THR 149 LYS 150 GLY 151 VAL 152 ILE 153
Unit 2	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147
Unit 3	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148 THR 149 LYS 150 GLY 151 VAL 152 ILE 153
Unit 4	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148
Unit 5	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148 THR 149 LYS 150 GLY 151 VAL 152
Unit 6	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148 THR 149
Unit 7	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147 PHE 148 THR 149 LYS 150 GLY 151 VAL 152
Unit 8	MET 1 PHE 2 LYS 3 PRO 4 HIS 5 VAL 6 THR 7 VAL 8 ALA 9 CYS 10 VAL 11 VAL 12 HIS 13 ALA 14 GLU 15 GLY 16 LYS 17 PHE 18 LEU 19 VAL 20 VAL 21 GLU 22 GLU 23 THR 24 ILE 25 ASN 26 GLY 27 LYS 28 ALA 29 LEU 30 TRP 31 ASN 32 GLN 33 PRO 34 ALA 35 GLY 36 HIS 37 LEU 38 GLU 39 ALA 40 ASP 41 GLU 42 THR 43 LEU 44 VAL 45 GLU 46 ALA 47 ALA 48 ALA 49 ARG 50 GLU 51 LEU 52 TRP 53 GLU 54 GLU 55 THR 56 GLY 57 ILE 58 SER 59 ALA 60 GLN 61 PRO 62 GLN 63 HIS 64 PHE 65 ILE 66 ARG 67 MET 68 HIS 69 GLN 70 TRP 71 ILE 72 ALA 73 PRO 74 ASP 75 LYS 76 THR 77 PRO 78 PHE 79 LEU 80 ARG 81 PHE 82 LEU 83 PHE 84 ALA 85 ILE 86 GLU 87 LEU 88 GLU 89 GLN 90 ILE 91 CYS 92 PRO 93 THR 94 GLN 95 PRO 96 HIS 97 ASP 98 SER 99 ASP 100 ILE 101 ASP 102 CYS 103 CYS 104 ARG 105 TRP 106 VAL 107 SER 108 ALA 109 GLU 110 GLU 111 ILE 112 LEU 113 GLN 114 ALA 115 SER 116 ASN 117 LEU 118 ARG 119 SER 120 PRO 121 LEU 122 VAL 123 ALA 124 GLU 125 SER 126 ILE 127 ARG 128 CYS 129 TYR 130 GLN 131 SER 132 GLY 133 GLN 134 ARG 135 TYR 136 PRO 137 LEU 138 GLU 139 MET 140 ILE 141 GLY 142 ASP 143 PHE 144 ASN 145 TRP 146 PRO 147