Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
(-)Biological Unit 9
(-)Biological Unit 10
(-)Biological Unit 11
(-)Biological Unit 12
(-)Biological Unit 13
(-)Biological Unit 14
(-)Biological Unit 15
(-)Biological Unit 16
(-)Biological Unit 17
(-)Biological Unit 18
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)
Image Biological Unit 9
Biological Unit 9  (Jmol Viewer)
Image Biological Unit 10
Biological Unit 10  (Jmol Viewer)
Image Biological Unit 11
Biological Unit 11  (Jmol Viewer)
Image Biological Unit 12
Biological Unit 12  (Jmol Viewer)
Image Biological Unit 13
Biological Unit 13  (Jmol Viewer)
Image Biological Unit 14
Biological Unit 14  (Jmol Viewer)
Image Biological Unit 15
Biological Unit 15  (Jmol Viewer)
Image Biological Unit 16
Biological Unit 16  (Jmol Viewer)
Image Biological Unit 17
Biological Unit 17  (Jmol Viewer)
Image Biological Unit 18
Biological Unit 18  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF NUDIX HYDROLASE ORF153, YMFB, FROM ESCHERICHIA COLI K-1
 
Authors :  M. K. Hong, J. K. Kim, L. W. Kang
Date :  16 Jun 11  (Deposition) - 27 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  A,I  (1x)
Biol. Unit 14:  B,L  (1x)
Biol. Unit 15:  C,G  (1x)
Biol. Unit 16:  D,E  (1x)
Biol. Unit 17:  F,K  (1x)
Biol. Unit 18:  H (1x),J (1x)
Keywords :  Nudix Fold, Nudix Motif, Hydrolase, (D)Ndp/(D)Ntp Binding, Dephosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. K. Hong
Structure And Atypical Hydrolysis Mechanism Of The Nudix Hydrolase Orf153 (Ymfb) From Escherichia Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHATASE NUDJ
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EC Number3.6.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNUDJ, ECOK1_10240, APECO1_216
    Organism ScientificESCHERICHIA COLI
    Organism Taxid405955

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)A           
Biological Unit 2 (1x) B          
Biological Unit 3 (1x)  C         
Biological Unit 4 (1x)   D        
Biological Unit 5 (1x)    E       
Biological Unit 6 (1x)     F      
Biological Unit 7 (1x)      G     
Biological Unit 8 (1x)       H    
Biological Unit 9 (1x)        I   
Biological Unit 10 (1x)         J  
Biological Unit 11 (1x)          K 
Biological Unit 12 (1x)           L
Biological Unit 13 (1x)A       I   
Biological Unit 14 (1x) B         L
Biological Unit 15 (1x)  C   G     
Biological Unit 16 (1x)   DE       
Biological Unit 17 (1x)     F    K 
Biological Unit 18 (1x)       H (1x) J (1x)  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 60)

Asymmetric Unit (2, 60)
No.NameCountTypeFull Name
1MN24Ligand/IonMANGANESE (II) ION
2SO436Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 6 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 7 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 8 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 9 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 10 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 11 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 12 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 13 (1, 6)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 14 (1, 6)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 15 (1, 6)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 16 (1, 6)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 17 (1, 6)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 18 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (60, 60)

Asymmetric Unit (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:51 , GLU A:55 , MN A:155 , SO4 A:156 , SO4 A:157 , HOH A:160 , HOH A:162 , HOH A:163BINDING SITE FOR RESIDUE MN A 154
02AC2SOFTWAREGLU A:51 , MN A:154 , SO4 A:156 , HOH A:159 , HOH A:163 , HOH A:164 , HOH A:166BINDING SITE FOR RESIDUE MN A 155
03AC3SOFTWAREALA A:35 , GLY A:36 , HIS A:37 , GLU A:51 , MN A:154 , MN A:155 , SO4 A:157 , HOH A:163 , HOH A:164 , HOH A:165 , HOH A:166BINDING SITE FOR RESIDUE SO4 A 156
04AC4SOFTWAREGLU A:23 , ASN A:32 , ALA A:35 , GLY A:36 , GLU A:51 , GLU A:55 , MN A:154 , SO4 A:156 , SO4 A:158 , HOH A:162BINDING SITE FOR RESIDUE SO4 A 157
05AC5SOFTWARETHR A:7 , ASN A:32 , ALA A:35 , GLY A:36 , ARG A:81 , SO4 A:157BINDING SITE FOR RESIDUE SO4 A 158
06AC6SOFTWAREGLU B:51 , GLU B:55 , SO4 B:156 , SO4 B:157BINDING SITE FOR RESIDUE MN B 154
07AC7SOFTWAREGLU B:51 , SO4 B:156 , HOH B:177BINDING SITE FOR RESIDUE MN B 155
08AC8SOFTWAREGLY B:36 , HIS B:37 , GLU B:51 , MN B:154 , MN B:155 , SO4 B:157 , HOH B:161 , HOH B:213BINDING SITE FOR RESIDUE SO4 B 156
09AC9SOFTWAREGLU B:23 , ALA B:35 , GLY B:36 , GLU B:51 , GLU B:55 , MN B:154 , SO4 B:156 , SO4 B:158BINDING SITE FOR RESIDUE SO4 B 157
10BC1SOFTWARETHR B:7 , ASN B:32 , ALA B:35 , GLY B:36 , ARG B:81 , SO4 B:157BINDING SITE FOR RESIDUE SO4 B 158
11BC2SOFTWAREGLU C:51 , GLU C:55 , MN C:155 , SO4 C:156 , SO4 C:157BINDING SITE FOR RESIDUE MN C 154
12BC3SOFTWAREGLU C:51 , MN C:154 , SO4 C:156 , HOH C:269BINDING SITE FOR RESIDUE MN C 155
13BC4SOFTWAREGLY C:36 , HIS C:37 , GLU C:51 , MN C:154 , MN C:155 , SO4 C:157 , HOH C:250 , HOH C:269BINDING SITE FOR RESIDUE SO4 C 156
14BC5SOFTWAREGLU C:23 , ALA C:35 , GLY C:36 , GLU C:51 , GLU C:55 , MN C:154 , SO4 C:156 , SO4 C:158BINDING SITE FOR RESIDUE SO4 C 157
15BC6SOFTWARETHR C:7 , ASN C:32 , ALA C:35 , GLY C:36 , ARG C:81 , SO4 C:157BINDING SITE FOR RESIDUE SO4 C 158
16BC7SOFTWAREGLU D:51 , SO4 D:156BINDING SITE FOR RESIDUE MN D 154
17BC8SOFTWAREGLU D:51 , GLU D:55 , SO4 D:156 , SO4 D:157BINDING SITE FOR RESIDUE MN D 155
18BC9SOFTWAREGLY D:36 , HIS D:37 , GLU D:51 , GLU D:55 , MN D:154 , MN D:155 , SO4 D:157 , HOH D:252BINDING SITE FOR RESIDUE SO4 D 156
19CC1SOFTWAREGLU D:23 , ASN D:32 , ALA D:35 , GLY D:36 , GLU D:51 , GLU D:55 , ARG D:119 , MN D:155 , SO4 D:156 , SO4 D:158BINDING SITE FOR RESIDUE SO4 D 157
20CC2SOFTWARETHR D:7 , ASN D:32 , ALA D:35 , GLY D:36 , ARG D:81 , SO4 D:157BINDING SITE FOR RESIDUE SO4 D 158
21CC3SOFTWAREGLU E:51 , MN E:155 , SO4 E:156 , HOH E:172BINDING SITE FOR RESIDUE MN E 154
22CC4SOFTWAREGLU E:51 , GLU E:55 , MN E:154 , SO4 E:156 , SO4 E:157BINDING SITE FOR RESIDUE MN E 155
23CC5SOFTWAREALA E:35 , GLY E:36 , HIS E:37 , GLU E:51 , MN E:154 , MN E:155 , SO4 E:157 , HOH E:171 , HOH E:172BINDING SITE FOR RESIDUE SO4 E 156
24CC6SOFTWAREGLU E:23 , ALA E:35 , GLY E:36 , GLU E:51 , GLU E:55 , MN E:155 , SO4 E:156 , SO4 E:158BINDING SITE FOR RESIDUE SO4 E 157
25CC7SOFTWARETHR E:7 , ASN E:32 , ALA E:35 , GLY E:36 , ARG E:81 , SO4 E:157 , HOH E:235BINDING SITE FOR RESIDUE SO4 E 158
26CC8SOFTWAREGLU F:51 , GLU F:55 , MN F:155 , SO4 F:156 , SO4 F:157BINDING SITE FOR RESIDUE MN F 154
27CC9SOFTWAREGLU F:51 , MN F:154 , SO4 F:156BINDING SITE FOR RESIDUE MN F 155
28DC1SOFTWAREGLY F:36 , HIS F:37 , GLU F:51 , MN F:154 , MN F:155 , SO4 F:157BINDING SITE FOR RESIDUE SO4 F 156
29DC2SOFTWAREGLU F:23 , ALA F:35 , GLY F:36 , GLU F:51 , GLU F:55 , ARG F:119 , MN F:154 , SO4 F:156 , SO4 F:158 , HOH F:169BINDING SITE FOR RESIDUE SO4 F 157
30DC3SOFTWARETHR F:7 , ASN F:32 , ALA F:35 , GLY F:36 , ARG F:81 , SO4 F:157BINDING SITE FOR RESIDUE SO4 F 158
31DC4SOFTWAREGLU G:51 , GLU G:54 , GLU G:55 , MN G:155 , SO4 G:156 , SO4 G:158BINDING SITE FOR RESIDUE MN G 154
32DC5SOFTWAREGLU G:51 , MN G:154 , SO4 G:156BINDING SITE FOR RESIDUE MN G 155
33DC6SOFTWAREGLY G:36 , HIS G:37 , GLU G:51 , MN G:154 , MN G:155 , SO4 G:158BINDING SITE FOR RESIDUE SO4 G 156
34DC7SOFTWARETHR G:7 , ASN G:32 , ALA G:35 , GLY G:36 , ARG G:81 , SO4 G:158BINDING SITE FOR RESIDUE SO4 G 157
35DC8SOFTWAREGLU G:23 , ALA G:35 , GLY G:36 , GLU G:51 , GLU G:55 , MN G:154 , SO4 G:156 , SO4 G:157 , HOH G:168BINDING SITE FOR RESIDUE SO4 G 158
36DC9SOFTWAREGLU H:51 , GLU H:55 , SO4 H:156 , SO4 H:157BINDING SITE FOR RESIDUE MN H 154
37EC1SOFTWAREGLU H:51 , SO4 H:156BINDING SITE FOR RESIDUE MN H 155
38EC2SOFTWAREGLY H:36 , HIS H:37 , GLU H:51 , GLU H:55 , MN H:154 , MN H:155 , SO4 H:157 , HOH H:160 , HOH H:162BINDING SITE FOR RESIDUE SO4 H 156
39EC3SOFTWAREGLU H:23 , ASN H:32 , ALA H:35 , GLY H:36 , GLU H:51 , GLU H:55 , MN H:154 , SO4 H:156 , SO4 H:158BINDING SITE FOR RESIDUE SO4 H 157
40EC4SOFTWARETHR H:7 , ASN H:32 , ALA H:35 , GLY H:36 , ARG H:81 , SO4 H:157BINDING SITE FOR RESIDUE SO4 H 158
41EC5SOFTWAREGLU I:51 , GLU I:55 , MN I:155 , SO4 I:156 , SO4 I:157BINDING SITE FOR RESIDUE MN I 154
42EC6SOFTWAREARG I:50 , GLU I:51 , GLU I:54 , MN I:154 , SO4 I:156BINDING SITE FOR RESIDUE MN I 155
43EC7SOFTWAREHIS I:37 , GLU I:51 , MN I:154 , MN I:155 , SO4 I:157BINDING SITE FOR RESIDUE SO4 I 156
44EC8SOFTWAREALA I:35 , GLY I:36 , GLU I:55 , MN I:154 , SO4 I:156 , SO4 I:158BINDING SITE FOR RESIDUE SO4 I 157
45EC9SOFTWARETHR I:7 , ASN I:32 , ALA I:35 , ARG I:81 , SO4 I:157BINDING SITE FOR RESIDUE SO4 I 158
46FC1SOFTWAREGLU J:51 , GLU J:55 , MN J:155 , SO4 J:156 , SO4 J:157BINDING SITE FOR RESIDUE MN J 154
47FC2SOFTWAREGLU J:51 , MN J:154 , SO4 J:156 , HOH J:267BINDING SITE FOR RESIDUE MN J 155
48FC3SOFTWAREGLY J:36 , HIS J:37 , GLU J:51 , MN J:154 , MN J:155 , SO4 J:157 , HOH J:175BINDING SITE FOR RESIDUE SO4 J 156
49FC4SOFTWAREGLU J:23 , ALA J:35 , GLY J:36 , GLU J:51 , GLU J:55 , MN J:154 , SO4 J:156 , SO4 J:158 , HOH J:175BINDING SITE FOR RESIDUE SO4 J 157
50FC5SOFTWARETHR J:7 , ASN J:32 , ALA J:35 , GLY J:36 , ARG J:81 , SO4 J:157BINDING SITE FOR RESIDUE SO4 J 158
51FC6SOFTWAREGLU K:51 , GLU K:55 , MN K:155 , SO4 K:156 , SO4 K:157 , HOH K:178 , HOH K:204BINDING SITE FOR RESIDUE MN K 154
52FC7SOFTWAREGLU K:51 , MN K:154 , SO4 K:156BINDING SITE FOR RESIDUE MN K 155
53FC8SOFTWAREGLY K:36 , HIS K:37 , GLU K:51 , MN K:154 , MN K:155 , SO4 K:157 , HOH K:172BINDING SITE FOR RESIDUE SO4 K 156
54FC9SOFTWAREGLU K:23 , ASN K:32 , ALA K:35 , GLY K:36 , GLU K:51 , GLU K:55 , MN K:154 , SO4 K:156 , SO4 K:158 , HOH K:178BINDING SITE FOR RESIDUE SO4 K 157
55GC1SOFTWARETHR K:7 , ASN K:32 , ALA K:35 , GLY K:36 , ARG K:81 , SO4 K:157BINDING SITE FOR RESIDUE SO4 K 158
56GC2SOFTWAREGLU L:51 , MN L:155 , SO4 L:156BINDING SITE FOR RESIDUE MN L 154
57GC3SOFTWAREGLU L:51 , GLU L:54 , GLU L:55 , MN L:154 , SO4 L:156 , SO4 L:157BINDING SITE FOR RESIDUE MN L 155
58GC4SOFTWAREGLY L:36 , HIS L:37 , GLU L:51 , MN L:154 , MN L:155 , SO4 L:157 , HOH L:173BINDING SITE FOR RESIDUE SO4 L 156
59GC5SOFTWAREGLU L:23 , ALA L:35 , GLY L:36 , GLU L:51 , GLU L:55 , MN L:155 , SO4 L:156 , SO4 L:158 , HOH L:173BINDING SITE FOR RESIDUE SO4 L 157
60GC6SOFTWARETHR L:7 , ASN L:32 , ARG L:81 , SO4 L:157BINDING SITE FOR RESIDUE SO4 L 158

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SHD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SHD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SHD)

(-) PROSITE Motifs  (2, 24)

Asymmetric Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  12A:3-131
B:3-131
C:3-131
D:3-131
E:3-131
F:3-131
G:3-131
H:3-131
I:3-131
J:3-131
K:3-131
L:3-131
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  12A:36-57
B:36-57
C:36-57
D:36-57
E:36-57
F:36-57
G:36-57
H:36-57
I:36-57
J:36-57
K:36-57
L:36-57
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1A:3-131
-
-
-
-
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1A:36-57
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
B:3-131
-
-
-
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
B:36-57
-
-
-
-
-
-
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
C:3-131
-
-
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
C:36-57
-
-
-
-
-
-
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
D:3-131
-
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
D:36-57
-
-
-
-
-
-
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
E:3-131
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
E:36-57
-
-
-
-
-
-
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
F:3-131
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
F:36-57
-
-
-
-
-
-
Biological Unit 7 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:3-131
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
G:36-57
-
-
-
-
-
Biological Unit 8 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:3-131
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
H:36-57
-
-
-
-
Biological Unit 9 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
I:3-131
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
I:36-57
-
-
-
Biological Unit 10 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
J:3-131
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
J:36-57
-
-
Biological Unit 11 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
-
K:3-131
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
-
K:36-57
-
Biological Unit 12 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
-
-
L:3-131
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  1-
-
-
-
-
-
-
-
-
-
-
L:36-57
Biological Unit 13 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2A:3-131
-
-
-
-
-
-
-
I:3-131
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2A:36-57
-
-
-
-
-
-
-
I:36-57
-
-
-
Biological Unit 14 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2-
B:3-131
-
-
-
-
-
-
-
-
-
L:3-131
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2-
B:36-57
-
-
-
-
-
-
-
-
-
L:36-57
Biological Unit 15 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2-
-
C:3-131
-
-
-
G:3-131
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2-
-
C:36-57
-
-
-
G:36-57
-
-
-
-
-
Biological Unit 16 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
D:3-131
E:3-131
-
-
-
-
-
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
D:36-57
E:36-57
-
-
-
-
-
-
-
Biological Unit 17 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
F:3-131
-
-
-
-
K:3-131
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
F:36-57
-
-
-
-
K:36-57
-
Biological Unit 18 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NUDIXPS51462 Nudix hydrolase domain profile.NUDJ_ECOK13-131
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
H:3-131
-
J:3-131
-
-
2NUDIX_BOXPS00893 Nudix box signature.NUDJ_ECOK136-57
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
H:36-57
-
J:36-57
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 3SHD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shda_ A: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeeee..eeeee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee...............eeeeehhhhhhh......hhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: A:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: A:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd A   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdb_ B: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee...............eeeeehhhhhhh.....hhhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: B:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: B:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd B   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdc_ C: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee...............eeeeeehhhhhh.....hhhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: C:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: C:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd C   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdd_ D: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..ee.eeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee................ee..hhhhhhh......hhhhhhhhhhhh....hhh.eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: D:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: D:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd D   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain E from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shde_ E: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeeee..eeeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee...............eeeeehhhhhhhh.....hhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: E:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: E:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd E   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain F from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdf_ F: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee................eeeehhhhhhhh.....hhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: F:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: F:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd F   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain G from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdg_ G: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhh........eeeeeeee.......eeeeeeeee.............eeeeeeeehhhhhh......hhhhhhhhhhhh....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: G:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: G:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd G   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain H from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdh_ H: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee...ee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee.............eeeeeeehhhhhhhh.....hhhhhhhhhhh.....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: H:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: H:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd H   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain I from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdi_ I: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeee............ee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee.............eeeeeee.hhhhhh.....hhhhhhhhhhhh.....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: I:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: I:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd I   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain J from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdj_ J: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeeee..eeeee..eee.....hhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeeee................eeeehhhhhhhh.....hhhhhhhhhhhhh...hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: J:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: J:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd J   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain K from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdk_ K: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeeeee....eeee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee.............eeeeeeehhhhhhhh....hhhhhhhhhhhh.....hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: K:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: K:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd K   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain L from PDB  Type:PROTEIN  Length:150
 aligned with NUDJ_ECOK1 | A1AA28 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           NUDJ_ECOK1     1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
               SCOP domains d3shdl_ L: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeee..eeeeee........ee..eee.....hhhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee................eeee.hhhhhh.......hhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --NUDIX  PDB: L:3-131 UniProt: 3-131                                                                                               ------------------- PROSITE (1)
                PROSITE (2) -----------------------------------NUDIX_BOX  PDB: L:36-5--------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3shd L   1 MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SHD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SHD)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (NUDJ_ECOK1 | A1AA28)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3shd)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]
    Biological Unit 9  [ Jena3D ]
    Biological Unit 10  [ Jena3D ]
    Biological Unit 11  [ Jena3D ]
    Biological Unit 12  [ Jena3D ]
    Biological Unit 13  [ Jena3D ]
    Biological Unit 14  [ Jena3D ]
    Biological Unit 15  [ Jena3D ]
    Biological Unit 16  [ Jena3D ]
    Biological Unit 17  [ Jena3D ]
    Biological Unit 18  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3shd
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  NUDJ_ECOK1 | A1AA28
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.6.1.-
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  NUDJ_ECOK1 | A1AA28
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NUDJ_ECOK1 | A1AA283dku

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3SHD)