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(-) Description

Title :  THE CRYSTAL STRUCTURE OF TEICOPLANIN PSEUDOAGLYCONE DEACETYLASE ORF2* BOUND TO ONE OF ITS PRODUCTS DECANOIC ACID
 
Authors :  Y. Zou, J. S. Brunzelle, S. K. Nair
Date :  12 Jun 08  (Deposition) - 22 Jul 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Bound To Decanoic Acid, Alpha-Beta Single Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zou, J. S. Brunzelle, S. K. Nair
Crystal Structures Of Lipoglycopeptide Antibiotic Deacetylases: Implications For The Biosynthesis Of A40926 And Teicoplanin.
Chem. Biol. V. 15 533 2008
PubMed-ID: 18559264  |  Reference-DOI: 10.1016/J.CHEMBIOL.2008.05.009
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TEICOPLANIN PSEUDOAGLYCONE DEACETYLASE ORF2
    Chains: A
    Engineered: YES
    Gene: TCP14
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1DKA1Ligand/IonDECANOIC ACID
2MSE3Mod. Amino AcidSELENOMETHIONINE
3ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:16 , ASP A:19 , HIS A:164 , HOH A:622BINDING SITE FOR RESIDUE ZN A 300
2AC2SOFTWAREHIS A:16 , ASP A:18 , ASP A:19 , TRP A:63 , ARG A:75 , ASP A:97 , SER A:98 , ILE A:99 , HIS A:161 , GLN A:232 , HOH A:622BINDING SITE FOR RESIDUE DKA A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DFK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:50 -Pro A:51
2Leu A:188 -Pro A:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DFK)

(-) Exons   (0, 0)

(no "Exon" information available for 3DFK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with Q6ZZJ1_ACTTI | Q6ZZJ1 from UniProtKB/TrEMBL  Length:273

    Alignment length:266
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
         Q6ZZJ1_ACTTI     8 TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEMRSQKFQAVERYSSQMVLLNGSENNLFDRLDEHARQNAPHGGYGETTWPVVRSDDS 273
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.eeee....hhhhh........ee........ee...hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhh..eeee...hhhhh..........eee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dfk A   8 TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRmHTIWGLAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEmRSQKFQAVERYSSQmVLLNGSENNLFDRLDEHARQNAPHGGYGETTWPVVRSDDS 273
                                    17        27        37        47        57 |      67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217|      227     | 237       247       257       267      
                                                                              59-MSE                                                                                                                                                        218-MSE        233-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DFK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DFK)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6ZZJ1_ACTTI | Q6ZZJ1)
molecular function
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

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 Related Entries

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UniProtKB/TrEMBL
        Q6ZZJ1_ACTTI | Q6ZZJ1: 2x9l 2xad 3dff 3dfm

(-) Related Entries Specified in the PDB File

3dff 3dfi 3dfm