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(-) Description

Title :  CRYSTAL STRUCTURE OF DEACETYLASE-BOG COMPLEX IN BIOSYNTHESIS PATHWAY OF TEICOPLANIN.
 
Authors :  H. C. Chan, Y. T. Huang, S. Y. Lyu, C. J. Huang, Y. S. Li, Y. C. Liu, C. C. Chou M. D. Tsai, T. L. Li
Date :  23 Mar 10  (Deposition) - 09 Feb 11  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. C. Chan, Y. T. Huang, S. Y. Lyu, C. J. Huang, Y. S. Li, Y. C. Liu, C. C. Chou, M. D. Tsai, T. L. Li
Regioselective Deacetylation Based On Teicoplanin- Complexed Orf2* Crystal Structures.
Mol. Biosyst. V. 7 1224 2011
PubMed-ID: 21267472  |  Reference-DOI: 10.1039/C0MB00320D

(-) Compounds

Molecule 1 - N-ACYL GLM PEUDO-TEICOPLANIN DEACETYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867
    Other Details: BOG
    Synonym: PUTATIVE UNCHARACTERIZED PROTEIN TCP14, TEICOPLANIN PSEUDOAGLYCONE DEACETYLASE ORF2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1BOG1Ligand/IonB-OCTYLGLUCOSIDE
2MSE3Mod. Amino AcidSELENOMETHIONINE
3ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:16 , TRP A:63 , ARG A:75 , ASP A:97 , SER A:98 , VAL A:121 , HIS A:161 , PRO A:162 , ASP A:163 , TYR A:190 , HOH A:2154 , HOH A:2214 , HOH A:2253BINDING SITE FOR RESIDUE BOG A4001
2AC2SOFTWAREHIS A:16 , ASP A:19 , HIS A:164 , HOH A:2253BINDING SITE FOR RESIDUE ZN A3001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X9L)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:50 -Pro A:51
2Leu A:188 -Pro A:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2X9L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2X9L)

(-) Exons   (0, 0)

(no "Exon" information available for 2X9L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with Q6ZZJ1_ACTTI | Q6ZZJ1 from UniProtKB/TrEMBL  Length:273

    Alignment length:266
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267      
         Q6ZZJ1_ACTTI     8 TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEMRSQKFQAVERYSSQMVLLNGSENNLFDRLDEHARQNAPHGGYGETTWPVVRSDDS 273
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---PIG-L-2x9lA01 A:11-175                                                                                                                                               ---------------------------------------------------------------  --------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.eeee....hhhhh..........--------.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhh...eeee...hhhhh..........eee...ee...hhhhhhhhhhhhhhhhhhhhhhhh--.hhhhhhhhhhhhhh.......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x9l A   8 TRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRmHTIWGLAPDDDAVLYRRKEDIAALDHLRVAHRHGRFLDSIYRKLPDGRWLTA--------AVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWEDLPYAVFKSGAVELPQGFRLGSADVSSVKPEmRSQKFQAVERYSSQmVLLNG--NNLFDRLDEHARQNAPHGGYGETTWPVVRSDDS 273
                                    17        27        37        47        57 |      67        77        87        97       107   |     -  |    127       137       147       157       167       177       187       197       207       217|      227     | 237|  |   247       257       267      
                                                                              59-MSE                                             111      120                                                                                               218-MSE        233-MSE8  |                                
                                                                                                                                                                                                                                                                   241
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2X9L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2X9L)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: PIG-L] (5)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6ZZJ1_ACTTI | Q6ZZJ1)
molecular function
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6ZZJ1_ACTTI | Q6ZZJ1: 2xad 3dff 3dfk 3dfm

(-) Related Entries Specified in the PDB File

2xad CRYSTAL STRUCTURE OF DEACETYLASE-TEICOPLANIN COMPLEX IN BIOSYNTHESIS PATHWAY OF TEICOPLANIN
3dff THE CRYSTAL STRUCTURE OF TEICOPLANIN PSEUDOAGLYCONE DEACETYLASE ORF2.
3dfk THE CRYSTAL STRUCTURE OF TEICOPLANIN PSEUDOAGLYCONE DEACETYLASE ORF2* BOUND TO ONE OF ITS PRODUCTS DECANOIC ACID
3dfm THE CRYSTAL STRUCTURE OF THE ZINC INHIBITED FORM OF TEICOPLANIN DEACETYLASE ORF2