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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ANTIMICROBIAL REAGENT A40926 PSEUDOAGLYCONE DEACETYLASE DBV21
 
Authors :  Y. Zou, J. S. Brunzelle, S. K. Nair
Date :  12 Jun 08  (Deposition) - 22 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Single Alpha-Beta Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zou, J. S. Brunzelle, S. K. Nair
Crystal Structures Of Lipoglycopeptide Antibiotic Deacetylases: Implications For The Biosynthesis Of A40926 And Teicoplanin.
Chem. Biol. V. 15 533 2008
PubMed-ID: 18559264  |  Reference-DOI: 10.1016/J.CHEMBIOL.2008.05.009

(-) Compounds

Molecule 1 - PSEUDOAGLYCONE DEACETYLASE DBV21
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Gene: TCP14
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:16 , ASP A:19 , HIS A:161 , HOH A:356BINDING SITE FOR RESIDUE ZN A 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DFI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:50 -Pro A:51
2Leu A:185 -Pro A:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DFI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DFI)

(-) Exons   (0, 0)

(no "Exon" information available for 3DFI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
 aligned with Q7WZ70_9ACTN | Q7WZ70 from UniProtKB/TrEMBL  Length:270

    Alignment length:265
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265     
         Q7WZ70_9ACTN     6 DRTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFAGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALDQLGAGHRHGRFLDAIYRRSPDGQWLLHHNEGSMVRQQSPANNHDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLWQDLPYAAYSQDLAELPDGLRLGSPELSFVDEEARTRKFQAMKHYATQLSVLDGPNKNLFAKLDEHARNAAPDGGYNETTWPVIRYAAE 270
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh..eeee....hhhhh-----------------------hhhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhh...eeee...hhhhhh.........eee...eeee.hhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhh.....eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dfi A   6 DRTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFAGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALDQLGAGHRHGRFLDAIYR-----------------------NNHDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLWQDLPYAAYSQDLAELPDGLRLGSPELSFVDEEARTRKFQAMKHYATQLSVLDGPNKNLFAKLDEHARNAAPDGGYNETTWPVIRYAAE 270
                                    15        25        35        45        55        65        75        85        95     |   -         -       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265     
                                                                                                                         101                     125
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DFI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DFI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DFI)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q7WZ70_9ACTN | Q7WZ70)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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(-) Related Entries Specified in the PDB File

3dff 3dfk 3dfm