3D12 - JenaLib

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:402 , SER A:405 , HIS A:406 , ARG E:90 , ARG E:91	BINDING SITE FOR RESIDUE SO4 A 1368
02	AC2	SOFTWARE	ASN A:404 , ALA B:97 , ALA E:87 , ARG E:90	BINDING SITE FOR RESIDUE SO4 A 1369
03	AC3	SOFTWARE	NAG A:1210	BINDING SITE FOR RESIDUE SO4 A 1370
04	AC4	SOFTWARE	NAG A:1313 , NAG A:1314	BINDING SITE FOR RESIDUE SO4 A 1371
05	AC5	SOFTWARE	HOH A:46 , HOH A:47 , LYS A:541 , ASN A:543 , GLU A:544	BINDING SITE FOR RESIDUE SO4 A 1372
06	AC6	SOFTWARE	ARG A:480	BINDING SITE FOR RESIDUE SO4 A 1373
07	AC7	SOFTWARE	GLN A:434 , ARG A:435 , SO4 A:1375	BINDING SITE FOR RESIDUE SO4 A 1374
08	AC8	SOFTWARE	TYR A:377 , ASP A:433 , ARG A:435 , LEU A:436 , SO4 A:1374	BINDING SITE FOR RESIDUE SO4 A 1375
09	AC9	SOFTWARE	LYS A:596 , PRO A:598 , GLU A:599 , GLN A:600	BINDING SITE FOR RESIDUE SO4 A 1376
10	BC1	SOFTWARE	GLU B:85 , ALA B:87 , ARG B:90 , HIS B:133 , ASP B:134	BINDING SITE FOR RESIDUE SO4 B 202
11	BC2	SOFTWARE	ARG B:90 , ARG B:91	BINDING SITE FOR RESIDUE SO4 B 203
12	BC3	SOFTWARE	ASN D:497 , LXB D:1461	BINDING SITE FOR RESIDUE GXL D 1467
13	BC4	SOFTWARE	ARG D:402 , SER D:405 , HIS D:406	BINDING SITE FOR RESIDUE SO4 D 1468
14	BC5	SOFTWARE	NAG D:1310	BINDING SITE FOR RESIDUE SO4 D 1469
15	BC6	SOFTWARE	NAG D:1413 , NAG D:1414	BINDING SITE FOR RESIDUE SO4 D 1470
16	BC7	SOFTWARE	LYS D:541 , ASN D:543 , GLU D:544	BINDING SITE FOR RESIDUE SO4 D 1471
17	BC8	SOFTWARE	ARG D:480 , NAG D:1413	BINDING SITE FOR RESIDUE SO4 D 1472
18	BC9	SOFTWARE	GLN D:434 , ARG D:435 , SO4 D:1474	BINDING SITE FOR RESIDUE SO4 D 1473
19	CC1	SOFTWARE	TYR D:377 , ARG D:435 , LEU D:436 , TRP D:460 , SO4 D:1473	BINDING SITE FOR RESIDUE SO4 D 1474
20	CC2	SOFTWARE	LYS D:596 , GLU D:599 , GLN D:600	BINDING SITE FOR RESIDUE SO4 D 1475
21	CC3	SOFTWARE	GLY D:327 , GLY D:328 , GLY D:329 , ASN D:331 , GLN D:332 , HOH D:1520	BINDING SITE FOR RESIDUE SO4 D 1476
22	CC4	SOFTWARE	ARG D:318 , GLY D:329	BINDING SITE FOR RESIDUE SO4 D 1477
23	CC5	SOFTWARE	MAN A:1142 , THR E:158 , ARG E:159	BINDING SITE FOR RESIDUE SO4 E 190
24	CC6	SOFTWARE	VAL A:300 , ASN A:306 , GLN E:43 , LEU E:157 , THR E:158 , SO4 E:190	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 306 RESIDUES 1138 TO 1142
25	CC7	SOFTWARE	HOH A:25 , HOH A:26 , HOH A:27 , ASN A:378 , SER A:380 , SO4 A:1370 , MAN D:1242	BINDING SITE FOR MONO-SACCHARIDE NAG A1210 BOUND TO ASN A 378
26	CC8	SOFTWARE	HOH A:34 , HOH A:36 , GLN A:434 , ASN A:478 , TRP A:479 , ARG A:480 , ASN A:481 , SO4 A:1371	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 481 RESIDUES 1313 TO 1314
27	CC9	SOFTWARE	ASN A:497 , ASN A:529	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 529 RESIDUES 1361 TO 1367
28	DC1	SOFTWARE	ASP A:379 , NAG A:1210 , VAL D:300 , ASN D:306 , TYR D:309	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 306 RESIDUES 1238 TO 1242
29	DC2	SOFTWARE	ASN D:378 , SER D:380 , SO4 D:1469 , HOH D:1500 , HOH D:1501	BINDING SITE FOR MONO-SACCHARIDE NAG D1310 BOUND TO ASN D 378
30	DC3	SOFTWARE	ASN D:478 , TRP D:479 , ASN D:481 , SO4 D:1470 , SO4 D:1472 , HOH D:1479	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 481 RESIDUES 1413 TO 1414
31	DC4	SOFTWARE	PHE D:496 , ASN D:529 , GXL D:1467 , HOH D:1511 , HOH D:1512 , ARG E:112	BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 529 RESIDUES 1461 TO 1466
32	DC5	SOFTWARE	LXB D:1461 , BGC D:1466	BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 1462 TO 1465

SS Bonds (18, 18)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

Asymmetric Unit (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLYCP_NIPAV_004 *	R	248	K	GLYCP_NIPAV	---	---	A/D	R	248	K
2	UniProt	VAR_GLYCP_NIPAV_005 *	T	272	A	GLYCP_NIPAV	---	---	A/D	T	272	A
3	UniProt	VAR_GLYCP_NIPAV_006 *	G	327	D	GLYCP_NIPAV	---	---	A/D	G	327	D
4	UniProt	VAR_GLYCP_NIPAV_007 *	I	408	V	GLYCP_NIPAV	---	---	A/D	I	408	V
5	UniProt	VAR_GLYCP_NIPAV_008 *	V	426	I	GLYCP_NIPAV	---	---	A/D	V	426	I
6	UniProt	VAR_GLYCP_NIPAV_009 *	L	470	Q	GLYCP_NIPAV	---	---	A/D	L	470	Q
7	UniProt	VAR_GLYCP_NIPAV_010 *	N	478	S	GLYCP_NIPAV	---	---	A/D	N	478	S
8	UniProt	VAR_GLYCP_NIPAV_011 *	N	481	D	GLYCP_NIPAV	---	---	A/D	N	481	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLYCP_NIPAV_004 *	R	248	K	GLYCP_NIPAV	---	---	A/D	R	248	K
2	UniProt	VAR_GLYCP_NIPAV_005 *	T	272	A	GLYCP_NIPAV	---	---	A/D	T	272	A
3	UniProt	VAR_GLYCP_NIPAV_006 *	G	327	D	GLYCP_NIPAV	---	---	A/D	G	327	D
4	UniProt	VAR_GLYCP_NIPAV_007 *	I	408	V	GLYCP_NIPAV	---	---	A/D	I	408	V
5	UniProt	VAR_GLYCP_NIPAV_008 *	V	426	I	GLYCP_NIPAV	---	---	A/D	V	426	I
6	UniProt	VAR_GLYCP_NIPAV_009 *	L	470	Q	GLYCP_NIPAV	---	---	A/D	L	470	Q
7	UniProt	VAR_GLYCP_NIPAV_010 *	N	478	S	GLYCP_NIPAV	---	---	A/D	N	478	S
8	UniProt	VAR_GLYCP_NIPAV_011 *	N	481	D	GLYCP_NIPAV	---	---	A/D	N	481	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLYCP_NIPAV_004 *	R	248	K	GLYCP_NIPAV	---	---	D	R	248	K
2	UniProt	VAR_GLYCP_NIPAV_005 *	T	272	A	GLYCP_NIPAV	---	---	D	T	272	A
3	UniProt	VAR_GLYCP_NIPAV_006 *	G	327	D	GLYCP_NIPAV	---	---	D	G	327	D
4	UniProt	VAR_GLYCP_NIPAV_007 *	I	408	V	GLYCP_NIPAV	---	---	D	I	408	V
5	UniProt	VAR_GLYCP_NIPAV_008 *	V	426	I	GLYCP_NIPAV	---	---	D	V	426	I
6	UniProt	VAR_GLYCP_NIPAV_009 *	L	470	Q	GLYCP_NIPAV	---	---	D	L	470	Q
7	UniProt	VAR_GLYCP_NIPAV_010 *	N	478	S	GLYCP_NIPAV	---	---	D	N	478	S
8	UniProt	VAR_GLYCP_NIPAV_011 *	N	481	D	GLYCP_NIPAV	---	---	D	N	481	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (8, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLYCP_NIPAV_004 *	R	248	K	GLYCP_NIPAV	---	---	A	R	248	K
2	UniProt	VAR_GLYCP_NIPAV_005 *	T	272	A	GLYCP_NIPAV	---	---	A	T	272	A
3	UniProt	VAR_GLYCP_NIPAV_006 *	G	327	D	GLYCP_NIPAV	---	---	A	G	327	D
4	UniProt	VAR_GLYCP_NIPAV_007 *	I	408	V	GLYCP_NIPAV	---	---	A	I	408	V
5	UniProt	VAR_GLYCP_NIPAV_008 *	V	426	I	GLYCP_NIPAV	---	---	A	V	426	I
6	UniProt	VAR_GLYCP_NIPAV_009 *	L	470	Q	GLYCP_NIPAV	---	---	A	L	470	Q
7	UniProt	VAR_GLYCP_NIPAV_010 *	N	478	S	GLYCP_NIPAV	---	---	A	N	478	S
8	UniProt	VAR_GLYCP_NIPAV_011 *	N	481	D	GLYCP_NIPAV	---	---	A	N	481	D
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:428
 aligned with GLYCP_NIPAV | Q9IH62 from UniProtKB/Swiss-Prot  Length:602

    Alignment length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    602 
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595      | 
          GLYCP_NIPAV   176 EGVSNLVGLPNNICLQKTSNQILKPKLISYTLPVVGQSGTCITDPLLAMDEGYFAYSHLERIGSCSRGVSKQRIIGVGEVLDRGDEVPSLFMTNVWTPPNPNTVYHCSAVYNNEFYYVLCAVSTVGDPILNSTYWSGSLMMTRLAVKPKSNGGGYNQHQLALRSIEKGRYDKVMPYGPSGIKQGDTLYFPAVGFLVRTEFKYNDSNCPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKVVFIEISDQRLSIGSPSKIYDSLGQPVFYQASFSWDTMIKFGDVLTVNPLVVNWRNNTVISRPGQSQCPRFNTCPEICWEGVYNDAFLIDRINWISAGVFLDSNQTAENPVFTVFKDNEILYRAQLASEDTNAQKTITNCFLLKNKIWCISLVEIYDTGDNVIRPKLFAVKIPEQCT-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....................ee.hhhh.......eeeeeeeeeee..eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeeeee.......eeeeeeee...eeeeeeee........hhhhh...eeeeeee......hhhhhee......ee.....eeee.....eee..eeeeeeeeeee.hhh..hhhhh..........hhhhhh........eeeeeeeeeee........eeeee...........eeeeee..eeeeee.........eeeeeee....eeee...............................eeeee....eeeeeee........eeeeeee..eeeeeee......eeeeeeeeeeee...eeeeeeeeee.........eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------K-----------------------A------------------------------------------------------D--------------------------------------------------------------------------------V-----------------I-------------------------------------------Q-------S--D-------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d12 A 176 EGVSNLVGLPNNICLQKTSNQILKPKLISYTLPVVGQSGTCITDPLLAMDEGYFAYSHLERIGSCSRGVSKQRIIGVGEVLDRGDEVPSLFMTNVWTPPNPNTVYHCSAVYNNEFYYVLCAVSTVGDPILNSTYWSGSLMMTRLAVKPKSNGGGYNQHQLALRSIEKGRYDKVMPYGPSGIKQGDTLYFPAVGFLVRTEFKYNDSNCPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKVVFIEISDQRLSIGSPSKIYDSLGQPVFYQASFSWDTMIKFGDVLTVNPLVVNWRNNTVISRPGQSQCPRFNTCPEICWEGVYNDAFLIDRINWISAGVFLDSNQTAENPVFTVFKDNEILYRAQLASEDTNAQKTITNCFLLKNKIWCISLVEIYDTGDNVIRPKLFAVKIPEQCTA 603
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with EFNB3_MOUSE | O35393 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:141
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168 
          EFNB3_MOUSE    29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ 169
               SCOP domains d3d12b_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..............ee......eeeeee.................eeeee.hhhhhh.......eeeee.......eeeeee.................eeeeee..............hhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------EPHRIN_RBD_1  PDB: B:112-139------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d12 B  29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ 169
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168

Chain D from PDB  Type:PROTEIN  Length:428
 aligned with GLYCP_NIPAV | Q9IH62 from UniProtKB/Swiss-Prot  Length:602

    Alignment length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    602 
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595      | 
          GLYCP_NIPAV   176 EGVSNLVGLPNNICLQKTSNQILKPKLISYTLPVVGQSGTCITDPLLAMDEGYFAYSHLERIGSCSRGVSKQRIIGVGEVLDRGDEVPSLFMTNVWTPPNPNTVYHCSAVYNNEFYYVLCAVSTVGDPILNSTYWSGSLMMTRLAVKPKSNGGGYNQHQLALRSIEKGRYDKVMPYGPSGIKQGDTLYFPAVGFLVRTEFKYNDSNCPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKVVFIEISDQRLSIGSPSKIYDSLGQPVFYQASFSWDTMIKFGDVLTVNPLVVNWRNNTVISRPGQSQCPRFNTCPEICWEGVYNDAFLIDRINWISAGVFLDSNQTAENPVFTVFKDNEILYRAQLASEDTNAQKTITNCFLLKNKIWCISLVEIYDTGDNVIRPKLFAVKIPEQCT-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....................ee.hhhh.......eeeeeeeeeee..eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeeeee.......eeeeeeee...eeeeeeee........hhhhh...eeeeeee.............ee....ee.....eeee.....eee..eeeeeeeeeee.hhh..hhhhh..........hhhhhh........eeeeeeeeeee........eeeee...........eeeeee..eeeeee.........eeeeeee....ee.................................eeeee....eeeeeee........eeeeeee..eeeeeee......eeeeeeeeeeee..eeeeeeeeeee.......eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------K-----------------------A------------------------------------------------------D--------------------------------------------------------------------------------V-----------------I-------------------------------------------Q-------S--D-------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d12 D 176 EGVSNLVGLPNNICLQKTSNQILKPKLISYTLPVVGQSGTCITDPLLAMDEGYFAYSHLERIGSCSRGVSKQRIIGVGEVLDRGDEVPSLFMTNVWTPPNPNTVYHCSAVYNNEFYYVLCAVSTVGDPILNSTYWSGSLMMTRLAVKPKSNGGGYNQHQLALRSIEKGRYDKVMPYGPSGIKQGDTLYFPAVGFLVRTEFKYNDSNCPITKCQYSKPENCRLSMGIRPNSHYILRSGLLKYNLSDGENPKVVFIEISDQRLSIGSPSKIYDSLGQPVFYQASFSWDTMIKFGDVLTVNPLVVNWRNNTVISRPGQSQCPRFNTCPEICWEGVYNDAFLIDRINWISAGVFLDSNQTAENPVFTVFKDNEILYRAQLASEDTNAQKTITNCFLLKNKIWCISLVEIYDTGDNVIRPKLFAVKIPEQCTA 603
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595

Chain E from PDB  Type:PROTEIN  Length:141
 aligned with EFNB3_MOUSE | O35393 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:141
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168 
          EFNB3_MOUSE    29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ 169
               SCOP domains d3d12e_ E: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee..............ee......eeeeee.................eeeee.hhhhhh.......eeeee.......eeeeee.................eeeeee..............hhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------EPHRIN_RBD_1  PDB: E:112-139------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3d12 E  29 SLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ 169
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (25, 27)

Asymmetric Unit(hide GO term definitions)

Chain A,D (GLYCP_NIPAV | Q9IH62)

molecular function
	GO:0004308	exo-alpha-sialidase activity	Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0019058	viral life cycle	A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Chain B,E (EFNB3_MOUSE | O35393)

molecular function
	GO:0046875	ephrin receptor binding	Interacting selectively and non-covalently with an ephrin receptor.
biological process
	GO:0031295	T cell costimulation	The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
	GO:0007628	adult walking behavior	The behavior of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg.
	GO:0016198	axon choice point recognition	The recognition of molecules at a choice point by an axon growth cone; at a choice point the growth cone determines the direction of its future growth.
	GO:0007411	axon guidance	The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
	GO:0030154	cell differentiation	The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
	GO:0048013	ephrin receptor signaling pathway	The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0007399	nervous system development	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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Asymmetric Unit
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		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BGC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GL0	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GLC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GXL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		LXB	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		LXZ	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MAN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NGA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NGZ	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3d12)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (12, 52)

Sites (32, 32)

SS Bonds (18, 18)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (8, 16)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (25, 27)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File